PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G142100.1.p | ||||||||
Common Name | GLYMA_06G142100, LOC100786198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 332aa MW: 37140.4 Da PI: 5.8807 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.9e-30 | 174 | 234 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ gs+fprsYYrCt++ +C++kk+v+r +++p+++e+tY+g+H+++ Glyma.06G142100.1.p 174 EDGFTWRKYGQKEILGSKFPRSYYRCTHQklyECQAKKQVQRLDQNPNIFEVTYRGDHTCH 234 7****************************9999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-28 | 168 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-26 | 170 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-38 | 173 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-27 | 174 | 234 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.208 | 174 | 236 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MMEEVINSIR RACVLAQNLE QDLPNLANQP AMMSLSIDQI TEAFSGAKEK MLQFSRQNQT 60 SDESPPTLVH ETTQLQPQMD ATLMQEWLRS SHALTMDQLF QMHQFHAARS TLQIGEMGGR 120 DGEDNFERNK GPEEMQGINE SSSRPRRRSR EANQEKRKVM VPAPQFGNTE MPPEDGFTWR 180 KYGQKEILGS KFPRSYYRCT HQKLYECQAK KQVQRLDQNP NIFEVTYRGD HTCHMSSTAL 240 SSVPLQQLLV DITQNNSNTI SSQLSPTMNL SLHPGGGSGT AASSGGASAS RFGGDYPVVD 300 MADAMFNSRS SSNNSMEFLF SPEDKSDPKI E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-18 | 174 | 233 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G142100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 5e-45 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528014.1 | 0.0 | WRKY transcription factor 55 isoform X1 | ||||
Refseq | XP_028236288.1 | 0.0 | WRKY transcription factor 55-like isoform X1 | ||||
TrEMBL | A0A445K9J4 | 0.0 | A0A445K9J4_GLYSO; WRKY transcription factor 55 | ||||
TrEMBL | K7KV10 | 0.0 | K7KV10_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G14731.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-50 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G142100.1.p |
Entrez Gene | 100786198 |