PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G133800.1.p | ||||||||
Common Name | GLYMA_06G133800, LOC100793260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 29036.3 Da PI: 5.3514 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.2e-19 | 38 | 90 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe+++++ +++ +LA+ lgL+ rqV +WFqNrRa++k Glyma.06G133800.1.p 38 KRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 90 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.8 | 3.4e-39 | 36 | 128 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 e+krr+s+eq+++LE Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+++L+ e Glyma.06G133800.1.p 36 ENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQLE 125 58**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ Glyma.06G133800.1.p 126 LQK 128 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 12 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.61E-18 | 25 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 35 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-17 | 38 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.47E-14 | 38 | 93 | No hit | No description |
PRINTS | PR00031 | 9.0E-6 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-11 | 92 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MCMMEGDENI QASTKGKNVE SFTSLEAPRK KSKKIENKRR FSDEQIRSLE CIFESESKLE 60 PRKKMQLARD LGLQPRQVAI WFQNRRARWK SKRIEQEYRK LKDEYDNLAS RFESLKKEKD 120 SLQLELQKLS DLVVTSQDGG REDKDGKENS IEDGGSGSGY SSWKPEAKKP RFSNDEGLEE 180 RIGVYSDDQN ENSIIRGVEK SEDKGHQLLR MDDHDHADMP LASLEKWYSG VDPSGILDQS 240 CSSSQWLDFW T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56020 | 0.0 | cotyledon| meristem| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G133800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093544 | 0.0 | BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241177.1 | 0.0 | uncharacterized protein LOC100793260 | ||||
Refseq | XP_028236177.1 | 0.0 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A445K948 | 0.0 | A0A445K948_GLYSO; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | C6T7V9 | 0.0 | C6T7V9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G13890.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-50 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G133800.1.p |
Entrez Gene | 100793260 |