PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G125600.1.p
Common NameGLYMA_06G125600, Glyma06g13090.1, LOC100812027
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 365aa    MW: 40697.4 Da    PI: 6.0855
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G125600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29126187159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC+++k+v+rs+edp+++eitY+g+H+++
  Glyma.06G125600.1.p 126 LDDGYSWRKYGQKDILGALYPRGYYRCTHRnvqGCMATKQVQRSDEDPTIFEITYRGKHTCT 187
                          59***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.87121189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-29122187IPR003657WRKY domain
SuperFamilySSF1182902.48E-26125188IPR003657WRKY domain
SMARTSM007741.0E-41126188IPR003657WRKY domain
PfamPF031061.5E-27127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDHMGDPKSI IHELLQGLEL ARQLQVHLHM PSSSQETRDL LIQKIISTFE KVLEMVKWKG  60
PVPAGESSQH PLGAALIRMS DSPLSSEDSD RDLKDQDPNA FKKRNTLPRW TKQIRVTPGM  120
GVEGPLDDGY SWRKYGQKDI LGALYPRGYY RCTHRNVQGC MATKQVQRSD EDPTIFEITY  180
RGKHTCTVAN NVGSSSPIPL ENQEPSLNNT NIPQHQHQQN ILQSHEQQQN ELLLSLRKGL  240
RVQTENLDSP EQPLVPFRFP LSTNIKNESH VFPSPVLENF TSPSYVSPAA SGIGHFSVSP  300
SGVVNSFEGN PNLANSESQI NDMIPATTTT SAAPNSSTVG LEFPFDQFEF DGQNFTFDNP  360
RFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20126186868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.121120.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G125600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312320.0KT031232.1 Glycine max clone HN_CCL_107 WRKY transcription factor (Glyma06g13090.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304644.10.0probable WRKY transcription factor 53
TrEMBLI1KAM90.0I1KAM9_SOYBN; WRKY transcription factor
STRINGGLYMA06G13090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-51WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]