PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G121300.2.p
Common NameGLYMA_06G121300, LOC100798897
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 601aa    MW: 66778.7 Da    PI: 4.5611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G121300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.41.5e-1382285973374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL+ecA a+s+g+  + ++++++l++++s +g+p qR+aay++e+Laarla+s++++ykal+++e +   +s++laa+++++ev+P++k
  Glyma.06G121300.2.p 228 KLLYECAIALSEGNEVEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---TSDRLAAMQILFEVCPCFK 314
                          79*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f++++aN+aI eav+ + ++HiiDfdi+qG Q+++L+q+LasR+++pp++R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef++
  Glyma.06G121300.2.p 315 FGFIAANNAITEAVKDDMKIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVqrSVGGLRNIGQRLEKLAEALGLPFEFRA 404
                          ***********************************************************9999999************************ PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           va+r++ +++++L+++p+Eal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+s
  Glyma.06G121300.2.p 405 -VASRTSIVTPSMLNCSPDEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFES 493
                          .7**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+a+lpres++r++vEr++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF++ p+s++++++++ l+++v+ d y+++ee g+l +
  Glyma.06G121300.2.p 494 LDATLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRKLIKTVYCDRYKIKEEMGALHF 583
                          ***************************************************************************888************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gW+d++L+++SaW+
  Glyma.06G121300.2.p 584 GWEDKNLIVASAWK 597
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.624200577IPR005202Transcription factor GRAS
PfamPF035145.1E-136228597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MSLVRSADLA PTSYENAKLF SLKGTDVRPG LSSQIFDPDK HRSMYMTDAY SGEGYEKYFH  60
DSQTEELIEP SSSSISGSSI HPDVASSYQL RASSGASMVA NNPSDSSFMS TRHHDAYQSN  120
SGSDLMENGS LDSRDDEGLM RLRLKALERA LLDDSDAGED EEEEEEEEED IFEAAQSMEI  180
DPDIAEWADS MHNMLLHGSP KESSSSDSNT SSISSTKEIS QTSQTPKKLL YECAIALSEG  240
NEVEGSSMIN NLRQMVSIQG EPSQRIAAYM VEGLAARLAE SGKSIYKALR CKEPPTSDRL  300
AAMQILFEVC PCFKFGFIAA NNAITEAVKD DMKIHIIDFD INQGSQYINL IQTLASRSSK  360
PPHVRLTGVD DPESVQRSVG GLRNIGQRLE KLAEALGLPF EFRAVASRTS IVTPSMLNCS  420
PDEALVVNFA FQLHHMPDES VSTVNERDQL LRLVKSLNPK LVTVVEQDVN TNTTPFLPRF  480
VEAYNYYSAV FESLDATLPR ESQDRMNVER QCLARDIVNV VACEGEDRIE RYEVAGKWRA  540
RMTMAGFTSS PMSTNVTDEI RKLIKTVYCD RYKIKEEMGA LHFGWEDKNL IVASAWKLPR  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6923260025381Protein SCARECROW
5b3h_A6e-6923260024380Protein SCARECROW
5b3h_D6e-6923260024380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226030.0hypocotyl| pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G121300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526667.10.0scarecrow-like protein 1
RefseqXP_003526668.10.0scarecrow-like protein 1
RefseqXP_014631848.10.0scarecrow-like protein 1
RefseqXP_014631849.10.0scarecrow-like protein 1
RefseqXP_014631850.10.0scarecrow-like protein 1
RefseqXP_028235982.10.0scarecrow-like protein 1
RefseqXP_028235983.10.0scarecrow-like protein 1
RefseqXP_028235984.10.0scarecrow-like protein 1
RefseqXP_028235985.10.0scarecrow-like protein 1
RefseqXP_028235986.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A445K8H10.0A0A445K8H1_GLYSO; Scarecrow-like protein 1 isoform A
TrEMBLK7KUM70.0K7KUM7_SOYBN; Uncharacterized protein
STRINGGLYMA06G12701.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]