PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G111300.1.p
Common NameAP2-5, GLYMA_06G111300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 232aa    MW: 25028 Da    PI: 6.7653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G111300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183282155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Glyma.06G111300.1.p 32 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82
                         59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-213292No hitNo description
SMARTSM003808.2E-363396IPR001471AP2/ERF domain
PfamPF008471.3E-113382IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-203392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-303391IPR001471AP2/ERF domain
PROSITE profilePS5103221.6943390IPR001471AP2/ERF domain
PRINTSPR003671.6E-83445IPR001471AP2/ERF domain
PRINTSPR003671.6E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKSEHKIKT EPSSKAMRLS SPSSSTSDCK KKKYKGVRMR SWGSWVSEIR APNQKTRIWL  60
GSYSTPEAAA RAYDAALLCL KGSSANLNFP LSSSQQYIPG DAVMSPKSIQ RVAAAAANSF  120
IDNATTPPSP PPASTPSSSS LASSPSLVSS PSDQIDDDAL LISSFQAYTS CGQANQSMAV  180
NVMEPWYTFG DGLQSPKYAD QMLSGDFFHV DSSHLLDDLY EESDIRLWSF C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143091264ATERF1
3gcc_A1e-143091264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.530780.0epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G111300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284570.0FJ228457.1 Glycine max AP2 domain-containing transcription factor 5 (AP2-5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239936.11e-169AP2 domain-containing transcription factor 5
RefseqXP_028235857.11e-169ethylene-responsive transcription factor ERF014-like
TrEMBLA0A0B2PNB21e-168A0A0B2PNB2_GLYSO; Ethylene-responsive transcription factor ERF012
TrEMBLC9WA631e-168C9WA63_SOYBN; AP2 domain-containing transcription factor 5
STRINGGLYMA06G11700.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-32ERF family protein