PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G107300.1.p
Common NameGLYMA_06G107300, LOC100775332
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 356aa    MW: 39984.7 Da    PI: 6.6438
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G107300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-1070101536
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                          k  rr+++NReAAr+sR+RKka++++Le    
  Glyma.06G107300.1.p  70 KMLRRLAQNREAARKSRLRKKAYVKQLESSRS 101
                          6789***********************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-466126IPR004827Basic-leucine zipper domain
PfamPF001701.2E-770103IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-770105No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-771104No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
PfamPF141441.5E-26159232IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKMDIYEPFQ QVSLWGDNFK LDGGLNSIAS PMLMVDSTSV ENKSEDIPQE SREPSGSGAD  60
QEATNKEVNK MLRRLAQNRE AARKSRLRKK AYVKQLESSR SKLMQLELEI GKARKQGLYM  120
GTVLDAGYIG STSETINPGI VAFEIEYGQW VEEQQRRNEE LRHAFQAQAS DVQLNVVVQS  180
VLNHYSNLFR MKADAAKADV LYLLSGVWKA SVERIFLWIG GSRPSQLLNI IVPQLEPLTD  240
QQIVSISNLR LSSQQAEDAL SLGLEKLQQS LVHDMAVDSL GVGNFGLQMV LAMEKFEALE  300
GFVIQADHLR QQTLLHMSRI LSTHQAARGL LALGEYFHRL RTLCSLWYAR PYDLA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G107300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527919.20.0transcription factor TGA3 isoform X1
RefseqXP_014631818.10.0transcription factor TGA3 isoform X1
RefseqXP_028235798.10.0transcription factor TGA3-like isoform X1
SwissprotQ392341e-126TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A0B2PNF00.0A0A0B2PNF0_GLYSO; Transcription factor TGA3
TrEMBLI1KA280.0I1KA28_SOYBN; Uncharacterized protein
STRINGGLYMA06G11250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-121TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]