PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G097900.1.p
Common NameGLYMA_06G097900, LOC100784789
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 305aa    MW: 33441.5 Da    PI: 6.0691
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.9e-17221257135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Glyma.06G097900.1.p 221 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 257
                          *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.5E-1386121IPR010399Tify domain
PROSITE profilePS5132014.92986121IPR010399Tify domain
PfamPF062006.9E-1490120IPR010399Tify domain
PfamPF062037.3E-16153195IPR010402CCT domain
PROSITE profilePS5101712.521153195IPR010402CCT domain
SMARTSM004013.7E-15215268IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.908215273IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-12218267No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15220262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-15221266No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PfamPF003202.9E-14221257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MFGSMNKIVS AEDTDGSVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAVSNHHIH  60
YSSHTIEEDG GATVEEVSAV PPLEISINDS SQLTISFRGQ VYVFDAVTPD KVQAVLLLLG  120
GNELTSGSQC AELSSQNQTG EEEYPAKCSL PQRAASLNRF RQKRKERCFD KKVRYSVRQE  180
VALRMHRNKG QFTSSKNQDG TNSWGSDQES GQDAVQSETL CTHCGISSKS TPMMRRGPSG  240
PRSLCNACGL FWANRGTLRD LSKRNQEHSL APPEQVDEGS NNNDFDCRSG IPAQHNNLVN  300
DNKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254280.0cotyledon| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G097900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580988.10.0uncharacterized protein LOC100784789 isoform X1
SwissprotQ9LRH64e-87GAT25_ARATH; GATA transcription factor 25
TrEMBLI1K9S50.0I1K9S5_SOYBN; Uncharacterized protein
STRINGGLYMA06G10280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-89GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]