PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G097100.1.p | ||||||||
Common Name | GLYMA_06G097100, LOC100799956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 607aa MW: 65851 Da PI: 7.2407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.9e-09 | 201 | 246 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 r++W++eEd +l av+++G g+W+t a+ +R++ q+ rw Glyma.06G097100.1.p 201 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 246 789************************9865555559999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.943 | 196 | 254 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 198 | 251 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-10 | 199 | 252 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-9 | 200 | 252 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-8 | 201 | 246 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.54E-11 | 202 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MPEKKSKKVS FTEEDAVTFI QRYDATTVLT LLQEVAHYSQ PKIDWFELVE KSATGISNAR 60 EYQMLWRHLA YRHSLPENFE DGAEPLDDDS DLECELEALP PVSLECASEA AACVKVMIAS 120 RTLSESAPSS STIEAPLTIN VPVCHSSRTR IENSQPSNLM QGTSFIFPVT VQRQTLPTIS 180 STDGIETKGI VGGNMASKRK RKAWSEEEDM QLRAAVQRWG EGNWATMAKG DDFPIKRSAT 240 QLAQRWSILR KKDGCTNTGT VTSTQYTTAE QLATRHSLSL ALDMPFKKLT APGMTDVKPS 300 TSVKNQVQIR NTTEKVASSF VPPQQALLGS SDLHAKSKLA DEKPVLKGNL ISDPVVKSAT 360 ATLGTRIDPL SNTISQIKVA QVKNAIDTKP AVSSLTKPSI STNLPSDPKN KHVTPLADKG 420 AQVKNAVDTT EPAVSSLTKP SISTNLPSDP KNKHATPLAD KVPLKQDVNP TKELQVSNPS 480 TTPKEKLQEN EPPKVTTGSQ VDSNPEKGRL EKGQETSIPL VKISGGEEVS KDKANQGVVC 540 EEQGSVKKAT EKNNIDKGSQ SLEQDKKINS INQSSNDQNG NDKHVNLPVQ DELSQSAKVV 600 KNDGEC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.5095 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G097100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-119 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527883.1 | 0.0 | uncharacterized protein LOC100799956 | ||||
TrEMBL | I1K9R4 | 0.0 | I1K9R4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G10170.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 | Representative plant | OGRP5923 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-63 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G097100.1.p |
Entrez Gene | 100799956 |