PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G095200.1.p
Common NameGLYMA_06G095200, LOC100820567
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 299aa    MW: 32460.6 Da    PI: 6.504
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G095200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.81.7e-3059115360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          +vrY+eC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e
  Glyma.06G095200.1.p  59 TVRYRECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 115
                          79**************************9.999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2058114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-2860112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.99762111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.38E-20199270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-31204272IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-25212268IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFDEHEDQE QEEEEEEEEM GFSVAAAASY DSLGNAAVRS KISGGDGVAA TVNSGRKGTV  60
RYRECQKNHA VSIGGHAVDG CCEFLAAGEE GTLEAVICAA CNCHRNFHRK EIDGETSPYQ  120
HRSQPQPQPL HPQYHHQFSP YYHRAPPPSA AGYLHHHLVT PPVSQHRPLA LPPLASGGVF  180
SREEEDMSNP SSSGGGGGGG FSGGGGSGSG TKKRFRTKFT QEQKDKMLAF AEKLGWRIQK  240
HDEAAVEQFC AETCIKRHVL KVWMHNNKHT LANSEQHSAG NGSNHLNSTT IIENSQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-282112741679ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192206SGGGGGGGFSGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.284440.0cotyledon| flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G095200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526539.10.0zinc-finger homeodomain protein 2 isoform X1
RefseqXP_028235640.10.0zinc-finger homeodomain protein 2-like isoform X1
SwissprotQ6YXH55e-73ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A445K7700.0A0A445K770_GLYSO; Zinc-finger homeodomain protein 1
TrEMBLI1K9P40.0I1K9P4_SOYBN; Uncharacterized protein
STRINGGLYMA06G09970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-63homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]