PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G086600.1.p | ||||||||
Common Name | GLYMA_06G086600, LOC100797291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92923.3 Da PI: 6.4262 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.5e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Glyma.06G086600.1.p 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 173.3 | 1.5e-54 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ +++l+v s+g g Glyma.06G086600.1.p 169 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRLSWFRDCRTVDVLNVMSTGngG 257 7899******************************************************.9999999999********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p +++vRa +lpSg+li+p+++g+s +++v+h+ l+ + Glyma.06G086600.1.p 258 TIELLYMQLYAPTTLAPgRDFWLLRYTSLLEDGSFVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPW 347 ***********************************************99988899*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s++ +++t++a+l+++++ Glyma.06G086600.1.p 348 SVPEVLRPLYESSMLLAQRTTMAALRHLRQ 377 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-17 | 19 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.27E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.16E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 24.162 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 5.28E-77 | 163 | 378 | No hit | No description |
SMART | SM00234 | 7.9E-40 | 168 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-35 | 168 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.1E-20 | 168 | 374 | IPR023393 | START-like domain |
Pfam | PF01852 | 8.5E-52 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 1.6E-51 | 704 | 844 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MMAVSSACKD GSKVALDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSFF 120 RQQTHNNNAT LATTDTNTSC ESVVTSGQRN LTPQQHPPRD ASPAGLLSIA EETLAEFLSK 180 ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPTRVAE ILKDRLSWFR 240 DCRTVDVLNV MSTGNGGTIE LLYMQLYAPT TLAPGRDFWL LRYTSLLEDG SFVVCERSLN 300 NTQNGPAMPP VQHFVRADML PSGYLIRPCE GGGSIIHIVD HMVLEPWSVP EVLRPLYESS 360 MLLAQRTTMA ALRHLRQISQ EVSQPSVTGW GRRPAALRAL SQRLSKGFNE AVNGFADDGW 420 SMLESDGIDD VTLLVNSSPS KMMGVSLVYN NNGFPSVSSS VLCAKASMLL QNVPPAILLR 480 FLREHRSEWA DSSIDAYSAA AIKAGPCSLP GARSGGFGGQ VILPLAHTIE HEEFMEVIKL 540 ENMGYYRDDM SIPGDVFLLQ LCSGVDEHAV GTSAELVFAP IDASFSDDAP ILPSGFRIIP 600 LDSGTDAASP NRTLDLASAL EVGTTANKAA SDNSAHSGST KSVMTIAFQF AFEVHLQENI 660 ATMARQYVRS IIASVQRVSL ALSPSRFGSH NAFHLPPGTP EAQTLARWIC NSYRFYLGVE 720 LLKCEGSESI LKSLWHHSDA VLCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD 780 DNGKKTLCTE FPQIMQQGFM CIQGGICLSS MGRPVSYERA VAWKVLNEEE SAHCICFMFI 840 NWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28092 | 0.0 | epicotyl| hypocotyl| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G086600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526496.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Refseq | XP_028235534.1 | 0.0 | homeobox-leucine zipper protein ATHB-15-like | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A445K6S1 | 0.0 | A0A445K6S1_GLYSO; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | I1K9E8 | 0.0 | I1K9E8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G09100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G086600.1.p |
Entrez Gene | 100797291 |