PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G086400.1.p
Common NameGLYMA_06G086400, LOC100776588
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 327aa    MW: 35984.8 Da    PI: 6.3464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G086400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39e-18217251135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Glyma.06G086400.1.p 217 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 251
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-8013307IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558211247IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-17211261IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-15212275No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14212248IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.58E-15216263No hitNo description
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15217251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEAQEFFQNT FCPQFPSGTN ITPSNANPSA ATADHFLVED FFDFSNDDND ATAVTDATFD  60
SLPTDVDSPN VTPLDSTTKN SNLPSSSSAD AHFSGDLSVP YDDLAELEWL SKFAEESFSS  120
EDLQKLQLIS GVRAQNDAAS SETRDPNPVM FNPQVSVRGK ARSKRTRGPP CNWTSRLVVL  180
SPNTTSSSSN SDAGKKPATP RRREAAFAEG GSEGRKCLHC ATDKTPQWRT GPMGPKTLCN  240
ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN SHRKVLELRR QKEMVKVQQH QFLQLHQQNM  300
MFDVPSSNGE DYLIHQHVGP DYTHLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.566231e-156somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G086400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527843.10.0GATA transcription factor 12
RefseqXP_028235533.10.0GATA transcription factor 12-like
SwissprotP697812e-86GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A445K6R50.0A0A445K6R5_GLYSO; GATA transcription factor
TrEMBLI1K9E70.0I1K9E7_SOYBN; GATA transcription factor
STRINGGLYMA06G09080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-84GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]