PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G085700.1.p
Common NameAP2-1, GLYMA_06G085700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 195aa    MW: 21411.2 Da    PI: 6.131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-183483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Glyma.06G085700.1.p 34 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 83
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-133383IPR001471AP2/ERF domain
CDDcd000185.27E-333392No hitNo description
SuperFamilySSF541711.05E-213492IPR016177DNA-binding domain
SMARTSM003802.4E-363497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-323492IPR001471AP2/ERF domain
PROSITE profilePS5103223.3413491IPR001471AP2/ERF domain
PRINTSPR003671.8E-103546IPR001471AP2/ERF domain
PRINTSPR003671.8E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRVSTEKLET EPESKKIKRI RGGGGGDSSN KHPLYRGVRM RNWGKWVSEI REPRKKSRIW  60
LGTFPTPEMA ARAHDVAALS IKGSAAILNF PHFANSLPRP ASLAPRDVQA AAAKAAHMDP  120
SSLSSLVSAM DLSSASDELS QIIELPSLES TDDGSVVLEK EFVFVDSLDA WMYQPPFGFD  180
TEQDTGFEGL MWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-212495476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.311980.0epicotyl| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284530.0FJ228453.1 Glycine max AP2 domain-containing transcription factor 1 (AP2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241356.11e-141dehydration-responsive element-binding protein 3-like
RefseqXP_028235525.11e-141dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD39e-69DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445K6Q91e-140A0A445K6Q9_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLC9WA591e-140C9WA59_SOYBN; AP2 domain-containing transcription factor 1
STRINGGLYMA06G08990.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]