PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G082300.1.p | ||||||||
Common Name | GLYMA_06G082300, LOC100811335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 1000aa MW: 110471 Da PI: 4.8362 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 8e-19 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Glyma.06G082300.1.p 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.7 | 8.4e-21 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l Glyma.06G082300.1.p 89 KGPWSKEEDEIIIDLVNRYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.7 | 2.4e-17 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ ++ gRt++++k++w+ Glyma.06G082300.1.p 141 KEAWTQEEELALIRAHQIYGNR-WAELAKLLP-GRTDNSIKNHWN 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.471 | 32 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.75E-16 | 33 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 39 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-14 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 32.426 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-19 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.10E-17 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 101 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-17 | 140 | 188 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.387 | 140 | 190 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-15 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-13 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 144 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1000 aa Download sequence Send to blast |
MEGDQTIPAA SDVVIEGVQK IRALNGRTTG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IDLVNRYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPTIN KEAWTQEEEL ALIRAHQIYG NRWAELAKLL PGRTDNSIKN 180 HWNSSVKKKL DSYLASGLLT QLQNVPLVGN PNQPIASISS RLQQSGDDNG PRGTEGEEVS 240 QCSQESANAG HFSSARDMSS VVLQTGEEYR PSEEPSQASC SEPYYVSLDE VTASLQDMAG 300 QEICTSQFIE QKYSHKPRNS SNGDCQLDLL DLTNISSLDF GQESSQMQND CVAPSENHNI 360 VNVPFQTSMG LGVATTMGPT SVKPEHMLMS DDECCRILFS EAISDECFSS GDYSKGVNMV 420 NLSGCTSFLC QSSLPSVPSV VSSAGDRLTY TYTAEANQLV GSEDQQFVSR TQDNIIYAND 480 LSSSPCIHRI DSTEMQEPSD VVKGDSKLVP VNSFGCGSDA KQTSYPTDEK PNMLTEQEDK 540 GALCYEPPRF PSLDIPFLSC DLIQSGGDMQ QEFSPLGIRQ FMMSSMNMDL TPFRLWDSPS 600 RDDSPDALLK SAAKTFTGTP SILKKRNRDL LSPLSDKRID KRLEIEMTST LIKNFSRLDV 660 MFDDNETQGA DLLPASSMQK RDSGTSVEGD KQNCGQAVKV EQVEDKNKSA ILNDKKSEDD 720 SGDNNSLDKI KQQPLDVDSE IKNDASAAAE IVQQPSGILV EHDRNDLLLY SPDQVNLKSE 780 KKISLSARTK KNPCSRINSP SAWVKEHERL SVAVTCVQSI SSSGPGENSG DHIGNDGGLE 840 TCNIFGGTPF RKSIESPSAW KSPWFMNTFL SSPRIDTEIT IEDFGYFMSP GDRSYDAIGL 900 MKQISEQTAA QYASAQEILG NETPKALPKD ASRNDRDEDQ EHIDAHNQHG NHCQLASSAL 960 VERRVLDFSE CGTPVRGDSS KSSAKNFSSP SSYLLKGCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-69 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-69 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G082300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527826.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_028235458.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_028235459.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A445K6J2 | 0.0 | A0A445K6J2_GLYSO; Transcription factor MYB3R-4 isoform A | ||||
TrEMBL | I1K997 | 0.0 | I1K997_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G08660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 | Representative plant | OGRP9448 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G082300.1.p |
Entrez Gene | 100811335 |