PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G080200.1.p
Common NameGLYMA_06G080200, LOC100804931
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 356aa    MW: 39576.7 Da    PI: 8.5339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.4e-55281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.06G080200.1.p  28 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDK 116
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.06G080200.1.p 117 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 155
                          ***9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6421177IPR003441NAC domain
PROSITE profilePS5100560.80928177IPR003441NAC domain
PfamPF023653.6E-2829155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQKEKEAIVK EGTTEIEMEG TRAKEETLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI  60
TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFN  120
SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRQDEWV VCRVFKKSGN  180
AKKYPSSNHA RAVNPYSLEI EPNILPPLMM QLGDPGAHFL YGRNYMNSAE LAELARVLRG  240
GGSTSSVNLP IQSHLSYPTS SSTGGGFTIS GLNLNLGGGG ATATTQPILR PMQPSPAPVH  300
TMAQVLDANS SMMTTSSLGA ENVGYGAEMS NLNLHGNRYM GVDHCMDLDN YWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-562718316171NO APICAL MERISTEM PROTEIN
1ut4_B3e-562718316171NO APICAL MERISTEM PROTEIN
1ut7_A3e-562718316171NO APICAL MERISTEM PROTEIN
1ut7_B3e-562718316171NO APICAL MERISTEM PROTEIN
3swm_A3e-562718319174NAC domain-containing protein 19
3swm_B3e-562718319174NAC domain-containing protein 19
3swm_C3e-562718319174NAC domain-containing protein 19
3swm_D3e-562718319174NAC domain-containing protein 19
3swp_A3e-562718319174NAC domain-containing protein 19
3swp_B3e-562718319174NAC domain-containing protein 19
3swp_C3e-562718319174NAC domain-containing protein 19
3swp_D3e-562718319174NAC domain-containing protein 19
4dul_A3e-562718316171NAC domain-containing protein 19
4dul_B3e-562718316171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-101AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527816.20.0NAC domain-containing protein 100 isoform X1
RefseqXP_028235424.10.0NAC domain-containing protein 100-like isoform X1
TrEMBLA0A445K6E50.0A0A445K6E5_GLYSO; Protein CUP-SHAPED COTYLEDON 2 isoform B
TrEMBLI1K9750.0I1K975_SOYBN; Uncharacterized protein
STRINGGLYMA06G08440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-105NAC domain containing protein 38