PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G069700.1.p
Common NameGLYMA_06G069700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 343aa    MW: 38694.7 Da    PI: 5.2554
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G069700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-08276324654
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +++k  +++Le+++++++ p+ +++  + + ++++ ++V  WF  +Ra 
  Glyma.06G069700.1.p 276 RLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKKVVKWFEDKRAE 324
                          56788899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.361268328IPR001356Homeobox domain
SuperFamilySSF466893.81E-8270334IPR009057Homeodomain-like
CDDcd000861.05E-5274323No hitNo description
SMARTSM003897.5E-4274332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-6276323IPR009057Homeodomain-like
PfamPF000465.2E-6276324IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAVAFQCLSC ARSDPFLTAS QSLTLPFQRK PLFCSVPLSS RARNLSSSIV AASSKKKNKK  60
KKSHDHVTKD DDDGVDAFEL LFKQLEEDLK RGDLPEDDDE ITEEDMALLE RELENALGDF  120
DAELLNSDVI DMETGTDSEN DDDDDDDDDG DGDDVENDDG GGDERSLNLK SWQMKKLARA  180
LKAGRRKTSM MKKMLGKYEK ICNLRALVLQ MLRDPPPNLL MMSLTIPDEP ATTVVSLETK  240
PSEIVHKETS IDHAEPEPKA KVPVHTLQRN WHAQKRLKKA HVDTLERVYR RSKRPTNAMI  300
SSIVHVTNIP RKKVVKWFED KRAEEGVPDR RVPYQRSVPE TA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KKKSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.149070.0cotyledon| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G069700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-90AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526417.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
RefseqXP_028235277.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
SwissprotQ8H0V52e-59OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0R0JD410.0A0A0R0JD41_SOYBN; Uncharacterized protein
STRINGGLYMA06G07330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101813138
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.18e-60overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]