PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G065200.1.p
Common NameGLYMA_06G065200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 398aa    MW: 44607.6 Da    PI: 6.342
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G065200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69.1e-083483812154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.06G065200.1.p 348 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 381
                          469*****************************87 PP
2ELK29.41.8e-10302323122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Glyma.06G065200.1.p 302 ELKHELKQGYKDKIVDIREEIL 323
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-20137181IPR005540KNOX1
PfamPF037906.1E-18139180IPR005540KNOX1
SMARTSM012563.5E-27190245IPR005541KNOX2
PfamPF037912.3E-20194244IPR005541KNOX2
SMARTSM011885.1E-4302323IPR005539ELK domain
PfamPF037891.3E-5302323IPR005539ELK domain
PROSITE profilePS512139.969302322IPR005539ELK domain
PROSITE profilePS5007111.726322385IPR001356Homeobox domain
SuperFamilySSF466894.71E-16324387IPR009057Homeodomain-like
SMARTSM003894.6E-11324389IPR001356Homeobox domain
CDDcd000865.55E-12325386No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25329385IPR009057Homeodomain-like
PfamPF059201.1E-17342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAYHNPQDLP LHHFTDQQQH HNHTLPHNSL LSDPASKPAS DPHQPAPNWL NNALLRTDYT  60
HTTTTTTTNT AANNSNNSTN FLNLHTSASD SGQWQARPIL NRNHSEVIDD VAGAGAESGD  120
LKGETAPVDG LLNWQNARLK AEILTHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ  180
NVVAKYSAFG QAIVGDDKEL DQFLSHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL  240
QSLTGVSPGE GTGATMSDDE DEQVDSDANL FDGALDGPDS MGFGPLIPTE NERSLMERVR  300
HELKHELKQG YKDKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL  360
VQETGLQLKQ INNWFINQRK RNWHSSPSTS TVLKSKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G065200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280600.0EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581338.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_028235207.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A445K5M70.0A0A445K5M7_GLYSO; Homeobox protein knotted-1-like 3 isoform B
STRINGGLYMA06G06886.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3