PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G064000.1.p
Common NameGLYMA_06G064000, LOC100819158
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 195aa    MW: 22161 Da    PI: 8.4779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G064000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18754253
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                         +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Glyma.06G064000.1.p  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                         69******9.**********8.....556*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-34666No hitNo description
Gene3DG3DSA:3.30.730.107.3E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
SMARTSM003801.7E-41770IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21766IPR016177DNA-binding domain
PfamPF008471.2E-11755IPR001471AP2/ERF domain
PRINTSPR003673.2E-11819IPR001471AP2/ERF domain
PRINTSPR003673.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS SQPETQRVVA SPNVITSSAS  120
NFSMKSNETE TMLLPQKRQE EEQEGEGNWV FKKVKVENAQ QFKPLEEDHI EQMIEELLHY  180
GSIELCSVIP AQAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18871670ATERF1
3gcc_A2e-18871670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.214710.0root
Functional Description ? help Back to Top
Source Description
UniProtEssential for all lupin cells independent of the respective tissue.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G064000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-154AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526228.11e-144protein PPLZ02
SwissprotP161464e-86PZ02_LUPPO; Protein PPLZ02
TrEMBLI1K8Q21e-143I1K8Q2_SOYBN; Uncharacterized protein
STRINGGLYMA06G06780.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-59ERF family protein
Publications ? help Back to Top
  1. Perrey R,Warskulat U,Wink M
    Molecular cloning of a lupin-specific gene from a cDNA library of suspension-cultured cells of Lupinus polyphyllus.
    Plant Mol. Biol., 1990. 15(1): p. 175-6
    [PMID:2103434]