PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.06G063500.1.p | ||||||||
Common Name | GLYMA_06G063500, LOC100809002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 697aa MW: 76774.2 Da PI: 7.0028 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.6e-28 | 204 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Glyma.06G063500.1.p 204 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 257 79*******************.********************************8 PP | |||||||
2 | Response_reg | 75.2 | 2.4e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ + +l+++l++ +y +++++ ++ +al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + Glyma.06G063500.1.p 20 VLAVDDDPTCLLVLETLLRRCQY-HATTTNQAIKALALLREHKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMK 107 799********************.***************999889*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +eel + Glyma.06G063500.1.p 108 GISHGACDYLLKPVRMEELKN 128 ******************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.4E-170 | 1 | 678 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.6E-42 | 17 | 153 | No hit | No description |
SuperFamily | SSF52172 | 1.17E-35 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.0E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.868 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.7E-22 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.26E-26 | 21 | 134 | No hit | No description |
PROSITE profile | PS51294 | 11.959 | 201 | 260 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 201 | 262 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-19 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-25 | 204 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-6 | 206 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 697 aa Download sequence Send to blast |
MTVEKKMNDS GDEFPVGMRV LAVDDDPTCL LVLETLLRRC QYHATTTNQA IKALALLREH 60 KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIS HGACDYLLKP 120 VRMEELKNIW QHVIRRKKFD SKEKNKTRNI DKPTSNSSNG LGSSGTGNSD HNEKLTKKRK 180 DQDEDEDEEQ ENDHDNDDPS AQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV 240 EKLTRENVAS HLQKYRLYLK RISCVANQQT NMVVALGGAD PSYLRMNSVS GVGHIQSISG 300 SGQLHNNAFR SFPPSGIINR LNTPAGLNVH GFPSGVLQLS QSQNLKNTND NLKFQSAIVP 360 ANQNGVHGMT VSVGLDQLQN NKGVMSVQNL TTVFDAKTTF PISNKLPDPR PKITNSGSHT 420 PDVSFSNNAL MLEPRPQGTQ GSVRIETLSS SVASQHSEFS LSLLDQGRYS DNWASTVQPS 480 VIQTNSYPPS ECFGQTNIPP TDNMASVPLQ GGNLSGASIT SLSRQSYDSM TDMHSEGVTF 540 TNRPGHISSN VPYQGWHDNN QDATHHSNIL SINSLTPVNG AAVPAGHAAM NSALHRNLDF 600 NYCDPLQMKH EGFVELTDEA LSKQHQGNIM NLPKSQQSHF SNNLGSLEDL VSSMMKQEND 660 KMKLLDGNLI CNNYSGGLSR CDSRFSSTFQ NIMHPR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-26 | 200 | 263 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.19674 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.06G063500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093836 | 0.0 | BT093836.1 Soybean clone JCVI-FLGm-24O12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526216.1 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | B8AEH1 | 1e-142 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
Swissprot | Q6K8X6 | 1e-142 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | I1K8P7 | 0.0 | I1K8P7_SOYBN; Two-component response regulator | ||||
STRING | GLYMA06G06730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-129 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.06G063500.1.p |
Entrez Gene | 100809002 |
Publications ? help Back to Top | |||
---|---|---|---|
|