PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G054900.1.p | ||||||||
Common Name | GLYMA_06G054900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Nin-like | ||||||||
Protein Properties | Length: 105aa MW: 11911.1 Da PI: 10.0261 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 41.8 | 2.1e-13 | 1 | 46 | 5 | 50 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++l+dls F+ ++k+A L++++Tv+K iCR+y + WP+R+++ Glyma.06G054900.1.p 1 MTLNDLSGVFHITMKAAKDVLEMSVTVIKAICRKYRLYKWPQRQLQ 46 6899****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 12.787 | 1 | 68 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-13 | 1 | 46 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MTLNDLSGVF HITMKAAKDV LEMSVTVIKA ICRKYRLYKW PQRQLQPLAR RLKVLKRALE 60 SSQDPVIIQT TNMEVRRIKQ EMTQLCGGVT PTGIEIPEVE ENSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G054900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028234287.1 | 2e-68 | uncharacterized protein LOC114414152 | ||||
TrEMBL | A0A0R0JIS0 | 1e-70 | A0A0R0JIS0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G05761.1 | 6e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 | Representative plant | OGRP10333 | 4 | 8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G054900.1.p |