PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G054500.1.p | ||||||||
Common Name | LOC100808823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 162aa MW: 18602.2 Da PI: 5.6187 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.1 | 7.4e-28 | 100 | 158 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYG+K+vk+s++pr+YYrC+ g +vkk+ver+++dp++v++tYeg H+h+ Glyma.06G054500.1.p 100 LDDGSKWRKYGKKMVKNSPNPRNYYRCSVDGWQVKKRVERDKDDPRFVITTYEGIHTHP 158 58********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-30 | 87 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 93 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.336 | 95 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-30 | 100 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-21 | 101 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MTDKNPRPAD SADNYVTNQW PLELSEHLNF DDDQWLDDDP DSFVSGHAFS HNNQANEVGG 60 FGGSGTHFEE SSSRDVGNER EKKEVRDRVA FKTKSEVEIL DDGSKWRKYG KKMVKNSPNP 120 RNYYRCSVDG WQVKKRVERD KDDPRFVITT YEGIHTHPSY S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-23 | 90 | 157 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-23 | 90 | 157 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G054500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527752.2 | 1e-118 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 5e-45 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A0B2RJR5 | 1e-116 | A0A0B2RJR5_GLYSO; Putative WRKY transcription factor 50 | ||||
STRING | GLYMA06G05721.1 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-42 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G054500.1.p |
Entrez Gene | 100808823 |
Publications ? help Back to Top | |||
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