PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G051900.1.p | ||||||||
Common Name | GLYMA_06G051900, LOC100806176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 26417.7 Da PI: 10.0239 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.6e-14 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky Glyma.06G051900.1.p 126 PWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKY 170 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.614 | 17 | 34 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.573 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-17 | 121 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-17 | 122 | 174 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 123 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-10 | 123 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-9 | 126 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRGIFLICLV ENMGIARKCS YCGNLGHNAR TCKSTPGQGQ LKLFGVQLDV SSSSSSSNSF 60 SSSSPSYSGM KRSFSTNYLL SSWASSSVPS SFSSPSLLGA NENSDSYLLN ANSLISTIQD 120 TKKGVPWTEE EHRIFLIGLE KLGKGNWRGI SKSFVTTRTP TQVASHAQKY FLRQSQNSFN 180 KRKHRPSPNL FDNWLSHRPH SLLNWVTTLT STNNCTVQSA SPDLELKLAT PTPLELSVAD 240 A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G051900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014632752.1 | 1e-177 | probable transcription factor At5g61620 | ||||
Refseq | XP_028235043.1 | 1e-177 | probable transcription factor At5g61620 isoform X1 | ||||
TrEMBL | A0A445K502 | 1e-175 | A0A445K502_GLYSO; Putative transcription factor isoform A | ||||
TrEMBL | K7KT79 | 1e-175 | K7KT79_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G05450.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15142 | 10 | 13 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G051900.1.p |
Entrez Gene | 100806176 |