PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G050000.1.p | ||||||||
Common Name | GLYMA_06G050000, LOC778079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39424.3 Da PI: 8.0423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl Glyma.06G050000.1.p 14 KGPWSPEEDTKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.2 | 3.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Glyma.06G050000.1.p 69 GGFSEEEDNIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.036 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.27E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.84 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDTKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRKELQARNK GNGGILKQEN SSSLLLQQNS AQQLHPCWPQ IPVLPLSSPY TNQSPSFNDQ 180 DSIRKLLIKL GGRFSDDYQP ILDGLNLQFP HGSNSLSSTQ QIQEEQVHVG SSALGCMNSI 240 GHNQVQFGQS NEYCAELVQG QGSFITTAIG EMVSSNDYSR RLLGGSLEFF YGEEMITDNK 300 IMGACASSSC GQSTNWGETS SSLMYPSLVA SNYEGVRQEM PRECAFQELS YPGAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30026 | 0.0 | root| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G050000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527745.1 | 0.0 | transcription factor RAX3 | ||||
Refseq | XP_028235020.1 | 0.0 | transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 5e-87 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A0B2SED3 | 0.0 | A0A0B2SED3_GLYSO; Transcription factor RAX3 | ||||
TrEMBL | A0A0R4J3G3 | 0.0 | A0A0R4J3G3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G05260.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-78 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G050000.1.p |
Entrez Gene | 778079 |
Publications ? help Back to Top | |||
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