PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G042100.1.p
Common NameDREB2, GLYMA_06G042100, Glyma06g04490.2, LOC732579
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 160aa    MW: 17950 Da    PI: 9.8681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G042100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-173382255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  Glyma.06G042100.1.p 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFHLRG 82
                         69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.1553390IPR001471AP2/ERF domain
SMARTSM003801.4E-373396IPR001471AP2/ERF domain
PfamPF008471.4E-103482IPR001471AP2/ERF domain
CDDcd000189.34E-283492No hitNo description
Gene3DG3DSA:3.30.730.101.5E-303491IPR001471AP2/ERF domain
PRINTSPR003675.0E-123445IPR001471AP2/ERF domain
PRINTSPR003675.0E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEEAGLGDCC SSNTTITRKS EKRKQQHQQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYATPVAAA RAYDTAVFHL RGPSARLNFP ELLSQDDDVS TQQQGKMSAD SIRKKATQVG  120
ARVDALQTAL QQSSSTHSIS SSHVSYEKPD LNEYPKPED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-163290463ATERF1
3gcc_A9e-163290463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724RKSEKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.83720.0cotyledon| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G042100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9651000.0HG965100.1 Glycine max mRNA for transcription factor DREB2 protein (DREB2 gene), cultivar BacGiang (BG).
GenBankLK9365090.0LK936509.1 Glycine max mRNA for DREB2 factor (DREB2 gene), cultivar DT26.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237254.21e-117dehydration-responsive element binding protein 2
RefseqXP_028234921.11e-117ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC306e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A445K4H01e-115A0A445K4H0_GLYSO; Ethylene-responsive transcription factor RAP2-1
TrEMBLC5IU971e-115C5IU97_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA06G04490.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.16e-48DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Chen M, et al.
    GmDREB2, a soybean DRE-binding transcription factor, conferred drought and high-salt tolerance in transgenic plants.
    Biochem. Biophys. Res. Commun., 2007. 353(2): p. 299-305
    [PMID:17178106]
  2. Charlson DV,Korth KL,Purcell LC
    Allantoate amidohydrolase transcript expression is independent of drought tolerance in soybean.
    J. Exp. Bot., 2009. 60(3): p. 847-51
    [PMID:19129162]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]