PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G041800.1.p | ||||||||
Common Name | GLYMA_06G041800, LOC100781015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 26599.1 Da PI: 9.2462 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.1e-20 | 90 | 149 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Glyma.06G041800.1.p 90 TRWNPTQEQIGILEMLYKGgIRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 149 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2e-37 | 90 | 151 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq Glyma.06G041800.1.p 90 TRWNPTQEQIGILEMLYKGGIRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.896 | 85 | 150 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-12 | 86 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.5E-6 | 87 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.18E-5 | 90 | 151 | No hit | No description |
Pfam | PF00046 | 2.3E-18 | 90 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 91 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGSMKVHQFT RGFCWEHEPF LTLGCKRLRP LAPKLPNTQT NTIPTTPSVP FDLKSFIRPE 60 SGPRKPVSSD DSKKDPPSPQ GQVETHPGGT RWNPTQEQIG ILEMLYKGGI RTPNAQQIEQ 120 ITVQLGKYGK IEGKNVFYWF QNHKARERQK QKRNSLAFSH SPRTHTIHSI VTLETTRGEV 180 VERDHEEDSP YKKKCRRWVF ECLEEQNMSS ACEQEEHRTL ELFPLHPEGR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56868 | 0.0 | hypocotyl| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G041800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096528 | 0.0 | BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241420.1 | 1e-172 | uncharacterized protein LOC100781015 | ||||
Refseq | XP_028234920.1 | 1e-172 | WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 3e-73 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A445K4N6 | 1e-171 | A0A445K4N6_GLYSO; WUSCHEL-related homeobox 4 | ||||
TrEMBL | C6TFY4 | 1e-171 | C6TFY4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G04470.1 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 | Representative plant | OGRP7167 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 4e-71 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G041800.1.p |
Entrez Gene | 100781015 |