PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G031400.1.p | ||||||||
Common Name | GLYMA_06G031400, LOC100786029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 10175.4 Da PI: 6.9728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 3 | 45 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT eE ++ da + +G++ +W +a+ +g g++ ++k ++ Glyma.06G031400.1.p 3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVQEVKMHY 45 *****************99*************.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.143 | 1 | 53 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-5 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 3 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-7 | 3 | 45 | No hit | No description |
SuperFamily | SSF46689 | 1.42E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-8 | 3 | 45 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVQE VKMHYEILQE DVIRIERDQI 60 PLPSYRGNER QIHNEQRRMR DLSLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-22 | 3 | 85 | 11 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G031400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098411 | 1e-142 | BT098411.1 Soybean clone JCVI-FLGm-12O6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528087.1 | 3e-57 | protein RADIALIS-like 6 | ||||
Refseq | XP_028234794.1 | 3e-57 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 2e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A445K475 | 7e-56 | A0A445K475_GLYSO; Protein RADIALIS-like 6 | ||||
TrEMBL | C6TL35 | 7e-56 | C6TL35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G03460.1 | 1e-56 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15365 | 10 | 12 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-27 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G031400.1.p |
Entrez Gene | 100786029 |