PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G027500.1.p
Common NameGLYMA_06G027500, LOC100805274
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 302aa    MW: 33032.5 Da    PI: 7.7425
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G027500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.67.9e-651032423154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                          s +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer+qqlaa++++++      ++kr++++      +++++  s
  Glyma.06G027500.1.p 103 SMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQ------HPKRHHRD------TTTTQLAS 180
                          6789**************************************************99855442......23333322......22223334 PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            ++   le  ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+
  Glyma.06G027500.1.p 181 APQPIIGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPES 242
                          456678999***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-61105241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-26107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.8E-25192240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGFFSLGGS QNKEEEEVEK GGDKNNLLLL RNEEIYNSKG GFEIWPQSSS SYHQHQNQAY  60
QNYFAFGVGP SRRNRSEDVS LCVSDHESTR FGLTVMRSGV SSSMSMNCQD CGNQAKKDCS  120
HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERHQQLAALQ QQHQHPKRHH RDTTTTQLAS  180
APQPIIGLEL GQFPPEVSTS AVFRCVRVSA VDASDEQCAY QTSVNIGGHV FKGFLYDQGP  240
ESSYTTSAAA EGSSGGEPQP LGLITGATTA TSGNNPFDPS LYPAPLNAFM AGTQFFQHPR  300
S*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G027500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-88AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527675.10.0protein SHI RELATED SEQUENCE 5
RefseqXP_028234734.10.0protein SHI RELATED SEQUENCE 5-like
RefseqXP_028234736.10.0protein SHI RELATED SEQUENCE 5-like
SwissprotQ9FXH74e-79SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLA0A445K3R50.0A0A445K3R5_GLYSO; Protein SHI RELATED SEQUENCE 7
TrEMBLI1K7M70.0I1K7M7_SOYBN; Uncharacterized protein
STRINGGLYMA06G03030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-63SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]