PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G027200.1.p | ||||||||
Common Name | NMH7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26197.9 Da PI: 9.7958 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s Glyma.06G027200.1.p 9 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 90.4 | 3.3e-30 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yq + g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++L +++L+ Le++++k+ k +R++K++++++qi++++kk ++ +e Glyma.06G027200.1.p 71 YQMTLGVDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGDCLNDLGMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEV 160 67788999********************************************************************************** PP K-box 91 nkaLrkkle 99 +++L + l+ Glyma.06G027200.1.p 161 HNRLLRDLD 169 ***998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.408 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.49E-39 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 4.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-37 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-18 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.374 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEYISP 60 STSTKQFFDQ YQMTLGVDLW NSHYENMQEN LKKLKDVNRN LRKEIRQRMG DCLNDLGMED 120 LKLLEEEMDK AAKVVRERKY KVITNQIDTQ RKKFNNEKEV HNRLLRDLDA RAEDPRFALI 180 DNGGEYESVI GFSNLGPRMF ALSLQPSHPS AQSGAAGSDL TTYPLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 7e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 7e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 7e-16 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11106 | 0.0 | flower| somatic embryo| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G027200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY310303 | 0.0 | AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236857.1 | 1e-171 | MADS-box protein NMH7 | ||||
Swissprot | P23706 | 1e-112 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | Q5VKS3 | 1e-169 | Q5VKS3_SOYBN; MADS-box protein GmNMH7 | ||||
STRING | GLYMA06G02990.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 | Representative plant | OGRP5199 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-85 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G027200.1.p |
Entrez Gene | 547720 |