PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G026100.5.p
Common NameGLYMA_06G026100, LOC100809369
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37455.4 Da    PI: 9.8626
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G026100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind401.31.3e-12213371301
            GAGA_bind   1 mdddgsre..rnkg..yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                          mdd g+re  r+k+  +y++a  + l +++   +q+m++iaerda+i+ernla+sekkaa+aerdma++qrd+a+aern+a++erdn+++
  Glyma.06G026100.5.p   1 MDDAGHREngRHKAadQYKSAqgQWLMQHQpsMKQIMAMIAERDAAIQERNLAISEKKAAYAERDMAYMQRDAAIAERNNAMLERDNAIA 90 
                          99****9999999889999555544444432145******************************************************** PP

            GAGA_bind  83 alllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
                          +l+++e+sl+     ++p+g+q+++g+k++++ qq +++ p+++d ++++re++++e+lp    ++e+ ++      +rak+pke+k+  
  Glyma.06G026100.5.p  91 TLQYRETSLSsgsmPSCPPGCQISRGVKHVHHPQQqVHHiPNMGDASYNTREMHTTEVLPAAPIPSETGKS------RRAKRPKEPKSAP 174
                          ********99888889*****************9955669*****************99955544444333......4667888888998 PP

            GAGA_bind 167 kkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                          ++kk++k+ kkvkkes+d +                            ska++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnG
  Glyma.06G026100.5.p 175 PNKKTSKPSKKVKKESEDLNnmfgkahewksgqemvnggddlnkqlavSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNG 264
                          999999999999999999555999999*************************************************************** PP

            GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          GWqSaCCttt+S+yPLP+++++r+aR++grKmS++af+klL++Laae +dlsnpvDLkdhWAkHGtn+++ti+
  Glyma.06G026100.5.p 265 GWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAESHDLSNPVDLKDHWAKHGTNRYITIK 337
                          ************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.4E-1061337IPR010409GAGA-binding transcriptional activator
SMARTSM012265.2E-1731337IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDAGHRENG RHKAADQYKS AQGQWLMQHQ PSMKQIMAMI AERDAAIQER NLAISEKKAA  60
YAERDMAYMQ RDAAIAERNN AMLERDNAIA TLQYRETSLS SGSMPSCPPG CQISRGVKHV  120
HHPQQQVHHI PNMGDASYNT REMHTTEVLP AAPIPSETGK SRRAKRPKEP KSAPPNKKTS  180
KPSKKVKKES EDLNNMFGKA HEWKSGQEMV NGGDDLNKQL AVSKADWKGQ DLGLNQVAYD  240
ESTMPAPVCS CTGVLRQCYK WGNGGWQSAC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA  300
FNKLLSRLAA ESHDLSNPVD LKDHWAKHGT NRYITIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.430350.0cotyledon| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G026100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936100.0BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581036.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_006581037.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_006581039.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_006581040.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_006581042.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_025984487.10.0uncharacterized protein LOC100809369 isoform X1
RefseqXP_028234720.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_028234721.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_028234722.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_028234723.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_028234724.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_028234725.10.0protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-153BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0B2PNG60.0A0A0B2PNG6_GLYSO; Protein BASIC PENTACYSTEINE6
TrEMBLI1K7L40.0I1K7L4_SOYBN; Uncharacterized protein
STRINGGLYMA06G02880.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-138basic pentacysteine 6