PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G022300.1.p

Common Name

GLYMA_06G022300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 229aa MW: 25437.6 Da PI: 10.0558

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G022300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.8	1.1e-13	157	206	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r r +kNRe+A rsR+RK+a+ + Le ++ L++eN++Lk +l+el+ Glyma.06G022300.1.p 157 DQRHTRVIKNRESAVRSRARKQAYRKGLEVEISRLTEENSRLKRQLKELQ 206 78999**************************************9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-8	154	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	156	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-12	156	207	No hit	No description
Pfam	PF00170	3.8E-10	157	206	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.75E-22	158	212	No hit	No description
SuperFamily	SSF57959	8.13E-11	159	210	No hit	No description
PROSITE pattern	PS00036	0	162	176	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGRRYPGGGL IVWGHEPGTS LSTLNVEIPL SLAKVEKKEE GGEAWPRGHP NLQRYFVRLS 60 VREKAMASSP CDCWPHSSSS SSSSIEHVWN DIKLASLSNS SVDLDLNNNN HSVSVSSFLN 120 QPLSTFLTLT STSSSSSVFH KHDHSLLSVS DPNTLQDQRH TRVIKNRESA VRSRARKQAY 180 RKGLEVEISR LTEENSRLKR QLKELQRCLC SSHTPRMAAP CRTSSSPF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.14128	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G022300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099310	0.0	BT099310.1 Soybean clone JCVI-FLGm-13N17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001345647.1	1e-112	bZIP transcription factor 47
TrEMBL	K7KSL3	1e-165	K7KSL3_SOYBN; Uncharacterized protein
STRING	GLYMA06G02470.2	1e-166	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16339	7	9
Representative plant	OGRP9528	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	1e-15	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G022300.1.p