PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G017800.3.p

Common Name

GLYMA_06G017800, LOC100785135

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 910aa MW: 101276 Da PI: 5.7251

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G017800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	593	644	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Glyma.06G017800.3.p 593 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 644 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	6.7E-4	205	298	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.837	581	664	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-25	596	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.36E-22	815	900	No hit	No description
PROSITE profile	PS51745	25.565	815	898	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.0E-21	815	895	No hit	No description
SMART	SM00666	2.9E-22	815	898	IPR000270	PB1 domain
CDD	cd06407	8.46E-40	816	897	No hit	No description
Pfam	PF00564	1.0E-17	816	897	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MMGDGGVISS AATMMEAPPP DGTTTTSMDF DYMGELFLDG CWMEASADGS DFLLQSPSFS 60 NTLFDPSFSW PALETNHNES QVAAFGSQQE SHNNNMVSVV AGGDYSQQFQ SETHSVEGAS 120 EGIRRWWFAP THTPTPSPGP GPSIMEKLIR ALMWIKDYNR NKDMLIQIWV PVHKEGRPIL 180 AADDLLFSLE SKSLNLAKYR EISVTYKFSA EESDSKELAW GLPGRVFRDK VPEWTPDVRF 240 FKIDEYPRVD HAQEYDVRGT LAVPIFEQGS KTCLGVIEVV MTTQQINYGP ELESVCKALE 300 AVDLRSSKQL SIQNVKACNR SYEAALPEIH EVLRSACEMH KLPLAQTWVP CVQQGKEGCR 360 HSEDNYLLCI SPVEHACYVG DPSIRSFHEA CTEHHLLKGE GVAGGAFMTN QPCFSDDITS 420 LSKKDYPMSH HARLFGLRAA VAIRLRSIYN STDDFVLEFF LPVDCNDIEE QRKMLTSLSN 480 IIQRVCRSLR VIREKELEEA NLSVNEVIAL ADSGFTRDEI CSEPQQKGMV ASLDTEEKSS 540 ETMGRKFSEP RQQQESPILK GNLDCVRECS TSVEGNLSSP GTSKTGERRR VKAEKTITLQ 600 VLRQYFAGSL KDAAKNIGVC TTTLKRICRQ HGIKRWPSRK IKKVGHSLQK LQLVIDSVQG 660 ASGAFQINSF YSNFPDLASP NLSGTGFFST LNQSDNPNST STQPEHGSLS PEGASKSPSS 720 SSSQSSISSH SCSSMSELQQ QHTTNIASDK DPATVGEYSA DVVLKLIRNE AKLKSLSQDR 780 AKLLPRSLSQ ETLGEHPKTQ YQLPLLKTSS SKVDSHRVKV TYGDEKTRFR MLKNWVYEDL 840 LQEIGRKFNV SDMSKFDVKY LDDDCEWILL TCDADLEECI DVCQSSESGT IKLSLQPSSH 900 SVRSSLEFR*

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MMGDGGVISS AATMMEAPPP DGTTTTSMDF DYMGELFLDG CWMEASADGS DFLLQSPSFS  60
NTLFDPSFSW PALETNHNES QVAAFGSQQE SHNNNMVSVV AGGDYSQQFQ SETHSVEGAS  120
EGIRRWWFAP THTPTPSPGP GPSIMEKLIR ALMWIKDYNR NKDMLIQIWV PVHKEGRPIL  180
AADDLLFSLE SKSLNLAKYR EISVTYKFSA EESDSKELAW GLPGRVFRDK VPEWTPDVRF  240
FKIDEYPRVD HAQEYDVRGT LAVPIFEQGS KTCLGVIEVV MTTQQINYGP ELESVCKALE  300
AVDLRSSKQL SIQNVKACNR SYEAALPEIH EVLRSACEMH KLPLAQTWVP CVQQGKEGCR  360
HSEDNYLLCI SPVEHACYVG DPSIRSFHEA CTEHHLLKGE GVAGGAFMTN QPCFSDDITS  420
LSKKDYPMSH HARLFGLRAA VAIRLRSIYN STDDFVLEFF LPVDCNDIEE QRKMLTSLSN  480
IIQRVCRSLR VIREKELEEA NLSVNEVIAL ADSGFTRDEI CSEPQQKGMV ASLDTEEKSS  540
ETMGRKFSEP RQQQESPILK GNLDCVRECS TSVEGNLSSP GTSKTGERRR VKAEKTITLQ  600
VLRQYFAGSL KDAAKNIGVC TTTLKRICRQ HGIKRWPSRK IKKVGHSLQK LQLVIDSVQG  660
ASGAFQINSF YSNFPDLASP NLSGTGFFST LNQSDNPNST STQPEHGSLS PEGASKSPSS  720
SSSQSSISSH SCSSMSELQQ QHTTNIASDK DPATVGEYSA DVVLKLIRNE AKLKSLSQDR  780
AKLLPRSLSQ ETLGEHPKTQ YQLPLLKTSS SKVDSHRVKV TYGDEKTRFR MLKNWVYEDL  840
LQEIGRKFNV SDMSKFDVKY LDDDCEWILL TCDADLEECI DVCQSSESGT IKLSLQPSSH  900
SVRSSLEFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.62142	0.0	cotyledon\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G017800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581139.1	0.0	protein NLP4 isoform X2
Refseq	XP_028234626.1	0.0	protein NLP4-like isoform X2
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A445K3C4	0.0	A0A445K3C4_GLYSO; Protein NLP4 isoform A
TrEMBL	K7KSJ1	0.0	K7KSJ1_SOYBN; Uncharacterized protein
STRING	GLYMA06G02030.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G017800.3.p
Entrez Gene	100785135