PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G017800.1.p

Common Name

GLYMA_06G017800, LOC100785135

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 911aa MW: 101404 Da PI: 5.7251

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G017800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	594	645	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Glyma.06G017800.1.p 594 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 645 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	6.7E-4	205	298	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.837	582	665	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-25	597	645	IPR003035	RWP-RK domain
SMART	SM00666	2.9E-22	816	899	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.0E-21	816	896	No hit	No description
SuperFamily	SSF54277	7.61E-22	816	901	No hit	No description
PROSITE profile	PS51745	25.565	816	899	IPR000270	PB1 domain
CDD	cd06407	8.41E-40	817	898	No hit	No description
Pfam	PF00564	1.0E-17	817	898	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MMGDGGVISS AATMMEAPPP DGTTTTSMDF DYMGELFLDG CWMEASADGS DFLLQSPSFS 60 NTLFDPSFSW PALETNHNES QVAAFGSQQE SHNNNMVSVV AGGDYSQQFQ SETHSVEGAS 120 EGIRRWWFAP THTPTPSPGP GPSIMEKLIR ALMWIKDYNR NKDMLIQIWV PVHKEGRPIL 180 AADDLLFSLE SKSLNLAKYR EISVTYKFSA EESDSKELAW GLPGRVFRDK VPEWTPDVRF 240 FKIDEYPRVD HAQEYDVRGT LAVPIFEQGS KTCLGVIEVV MTTQQINYGP ELESVCKALE 300 AVDLRSSKQL SIQNVKQACN RSYEAALPEI HEVLRSACEM HKLPLAQTWV PCVQQGKEGC 360 RHSEDNYLLC ISPVEHACYV GDPSIRSFHE ACTEHHLLKG EGVAGGAFMT NQPCFSDDIT 420 SLSKKDYPMS HHARLFGLRA AVAIRLRSIY NSTDDFVLEF FLPVDCNDIE EQRKMLTSLS 480 NIIQRVCRSL RVIREKELEE ANLSVNEVIA LADSGFTRDE ICSEPQQKGM VASLDTEEKS 540 SETMGRKFSE PRQQQESPIL KGNLDCVREC STSVEGNLSS PGTSKTGERR RVKAEKTITL 600 QVLRQYFAGS LKDAAKNIGV CTTTLKRICR QHGIKRWPSR KIKKVGHSLQ KLQLVIDSVQ 660 GASGAFQINS FYSNFPDLAS PNLSGTGFFS TLNQSDNPNS TSTQPEHGSL SPEGASKSPS 720 SSSSQSSISS HSCSSMSELQ QQHTTNIASD KDPATVGEYS ADVVLKLIRN EAKLKSLSQD 780 RAKLLPRSLS QETLGEHPKT QYQLPLLKTS SSKVDSHRVK VTYGDEKTRF RMLKNWVYED 840 LLQEIGRKFN VSDMSKFDVK YLDDDCEWIL LTCDADLEEC IDVCQSSESG TIKLSLQPSS 900 HSVRSSLEFR *

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MMGDGGVISS AATMMEAPPP DGTTTTSMDF DYMGELFLDG CWMEASADGS DFLLQSPSFS  60
NTLFDPSFSW PALETNHNES QVAAFGSQQE SHNNNMVSVV AGGDYSQQFQ SETHSVEGAS  120
EGIRRWWFAP THTPTPSPGP GPSIMEKLIR ALMWIKDYNR NKDMLIQIWV PVHKEGRPIL  180
AADDLLFSLE SKSLNLAKYR EISVTYKFSA EESDSKELAW GLPGRVFRDK VPEWTPDVRF  240
FKIDEYPRVD HAQEYDVRGT LAVPIFEQGS KTCLGVIEVV MTTQQINYGP ELESVCKALE  300
AVDLRSSKQL SIQNVKQACN RSYEAALPEI HEVLRSACEM HKLPLAQTWV PCVQQGKEGC  360
RHSEDNYLLC ISPVEHACYV GDPSIRSFHE ACTEHHLLKG EGVAGGAFMT NQPCFSDDIT  420
SLSKKDYPMS HHARLFGLRA AVAIRLRSIY NSTDDFVLEF FLPVDCNDIE EQRKMLTSLS  480
NIIQRVCRSL RVIREKELEE ANLSVNEVIA LADSGFTRDE ICSEPQQKGM VASLDTEEKS  540
SETMGRKFSE PRQQQESPIL KGNLDCVREC STSVEGNLSS PGTSKTGERR RVKAEKTITL  600
QVLRQYFAGS LKDAAKNIGV CTTTLKRICR QHGIKRWPSR KIKKVGHSLQ KLQLVIDSVQ  660
GASGAFQINS FYSNFPDLAS PNLSGTGFFS TLNQSDNPNS TSTQPEHGSL SPEGASKSPS  720
SSSSQSSISS HSCSSMSELQ QQHTTNIASD KDPATVGEYS ADVVLKLIRN EAKLKSLSQD  780
RAKLLPRSLS QETLGEHPKT QYQLPLLKTS SSKVDSHRVK VTYGDEKTRF RMLKNWVYED  840
LLQEIGRKFN VSDMSKFDVK YLDDDCEWIL LTCDADLEEC IDVCQSSESG TIKLSLQPSS  900
HSVRSSLEFR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.62142	0.0	cotyledon\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G017800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527641.2	0.0	protein NLP4 isoform X1
Refseq	XP_006581138.1	0.0	protein NLP4 isoform X1
Refseq	XP_028234624.1	0.0	protein NLP4-like isoform X1
Refseq	XP_028234625.1	0.0	protein NLP4-like isoform X1
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	K7KSI9	0.0	K7KSI9_SOYBN; Uncharacterized protein
STRING	GLYMA06G02030.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G017800.1.p
Entrez Gene	100785135