PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G016800.1.p

Common Name

GLYMA_06G016800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 220aa MW: 24937.3 Da PI: 6.626

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G016800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.2e-21	83	143	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Glyma.06G016800.1.p 83 RQRWTPTPLQLQVLERIFDEgNGTPSKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 143 89***************99************************************97 PP
2	Wus_type_Homeobox	99.6	2.4e-32	82	145	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq Glyma.06G016800.1.p 82 ARQRWTPTPLQLQVLERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 145 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.69	79	144	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-16	79	145	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-14	81	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-18	82	145	IPR009057	Homeodomain-like
Pfam	PF00046	6.5E-19	83	143	IPR001356	Homeobox domain
CDD	cd00086	1.88E-14	83	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEAEHHHQTS NAGGIIGGLY VKVMTDDQME LLRQQISVYA TICQQLVEMH KAVTTQQDLA 60 GLRLGNLYCD PLMACSGHKI TARQRWTPTP LQLQVLERIF DEGNGTPSKQ KIKDITIELG 120 QHGQISETNV YNWFQNRRAR SKRKQLTPAL NVVEPEVETE VEVESPKEKK TRAEGFQVQP 180 YENSSPHRIK DMYIQSPDIG FDQLMSKIEV AGCYSSYFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.39313	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G016800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523048.1	1e-145	WUSCHEL-related homeobox 8
Refseq	XP_028227368.1	1e-145	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-76	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	I1K7B8	1e-164	I1K7B8_SOYBN; Uncharacterized protein
STRING	GLYMA06G01940.1	1e-165	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-71	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Glyma.06G016800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]