PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G009200.1.p | ||||||||
Common Name | GLYMA_06G009200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 201aa MW: 22323.7 Da PI: 8.4033 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 90.4 | 4e-28 | 21 | 77 | 3 | 59 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 sg+++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstW p+++rr + q + Glyma.06G009200.1.p 21 SGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGD 77 6889*****************************************999986655544 PP | |||||||
2 | DUF702 | 71.6 | 2.4e-22 | 94 | 146 | 102 | 154 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+ +s+a frc++v+s+dd+ +e+aYqt+v+igGhvf+G+LydqG+e Glyma.06G009200.1.p 94 ELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEY 146 345***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.0E-23 | 23 | 73 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.8E-24 | 25 | 66 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 1.1E-18 | 91 | 145 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.6E-20 | 96 | 144 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSLGVKDQMQ RVRQGEEEVA SGGSKCQDCG NQAKKECSYL RCRTCCKNKG FHCQTHIKST 60 WTPVDHRRRH FQGQGGDHHI PQNQNQINPY SGLELRFPAA TNSMATFRCI HVRSMDDAVN 120 EIAYQTSVNI GGHVFSGLLY DQGPEYQRGH QGESSTGFVD KQQNNNNNNL DSSGASATHQ 180 EYPFPLSSFR PGYIKPKVSG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G009200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 7e-46 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006582461.1 | 1e-144 | protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0R0JAB5 | 1e-149 | A0A0R0JAB5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G01160.2 | 1e-111 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 3e-44 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G009200.1.p |