PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G002400.3.p

Common Name

GLYMA_06G002400, LOC100802811

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 837aa MW: 96872.5 Da PI: 7.9062

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G002400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.4	2.8e-24	94	180	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ + ++r+ ++tgCka +++kk++dg+w ++++++eHnH ++ Glyma.06G002400.3.p 94 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTV----VNPRPCKKTGCKAGIHIKKKQDGNWIIYNFVKEHNHGIC 179 5**************************************998877....9*********************************998 PP FAR1 91 p 91 p Glyma.06G002400.3.p 180 P 180 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-21	94	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-26	258	350	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.841	536	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-8	549	576	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.6E-6	550	572	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MEIDLELPIC EHEMLKSGSS GNDVTDTACD IYLEEQSINP SSMTEHSKKV LSENAFCCQD 60 QVDLNSNQVD AIDKFPFKEP QNGLEFESKE AAYSFYREYA RSVGFGITIK ASRRSKKSGK 120 FIDIKIACSR FGSKRESGTV VNPRPCKKTG CKAGIHIKKK QDGNWIIYNF VKEHNHGICP 180 DDFFRGSKQT SIVASQKKGM QLALEEGDVQ SMIEYFVSMQ CKNPNFFYAI DLDQNRHLRT 240 VFWVDSKGRL DYQNFHDIVL IDTFYLRNKY KIPFVPFVGV NHHFQYILLG CALVGEETVS 300 AFIWLMRAWL KAMSNLPPKV IITDQEQFLK EAVMEVFPDK RHCFCLSHIL CKITKNLDYI 360 IDQNNNFMGK FDKCIHHSCS DEQFEKRWWK LINRFELKND EWVQSLYEDR KKWVPTFMQD 420 ISLAGLSTTV RYESISSSFD KYICVDSTFK EFIEQYKVFS IDSFDMEAKA DFETKQKQPA 480 LRSLSPFEKQ LSTIYTDAIF RKFQLEILGM MSCHLQKETE KRANVTFLVD DFEEQKKFIV 540 SWKEADLYVS CSCCLFQYKG FLCRHAILVL QKSGITNIPS HYILKRWMKD AKANQFVGDV 600 ITRTAHRVQR FNDLCRQAII LSEIGSLSED TYRVASQALE EIYKHCVNAN NFARSTLESN 660 KLVLNGFDVE EKNDGCHRAK PTKKRKSFNK RECSDPERIN IKMLDDFQKR EQRNTRAHNF 720 DNCYISQQDI QTVDLDSRAS TLDVYYGAQR NVLGDLNSVS VMRDCYYGSQ LAILGLGQLH 780 SMPSRGSHYE MQHSMQRPLQ GLLTFRTPKA MEQPIRDSQF HGITSKQLDV DKSLSS*

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MEIDLELPIC EHEMLKSGSS GNDVTDTACD IYLEEQSINP SSMTEHSKKV LSENAFCCQD  60
QVDLNSNQVD AIDKFPFKEP QNGLEFESKE AAYSFYREYA RSVGFGITIK ASRRSKKSGK  120
FIDIKIACSR FGSKRESGTV VNPRPCKKTG CKAGIHIKKK QDGNWIIYNF VKEHNHGICP  180
DDFFRGSKQT SIVASQKKGM QLALEEGDVQ SMIEYFVSMQ CKNPNFFYAI DLDQNRHLRT  240
VFWVDSKGRL DYQNFHDIVL IDTFYLRNKY KIPFVPFVGV NHHFQYILLG CALVGEETVS  300
AFIWLMRAWL KAMSNLPPKV IITDQEQFLK EAVMEVFPDK RHCFCLSHIL CKITKNLDYI  360
IDQNNNFMGK FDKCIHHSCS DEQFEKRWWK LINRFELKND EWVQSLYEDR KKWVPTFMQD  420
ISLAGLSTTV RYESISSSFD KYICVDSTFK EFIEQYKVFS IDSFDMEAKA DFETKQKQPA  480
LRSLSPFEKQ LSTIYTDAIF RKFQLEILGM MSCHLQKETE KRANVTFLVD DFEEQKKFIV  540
SWKEADLYVS CSCCLFQYKG FLCRHAILVL QKSGITNIPS HYILKRWMKD AKANQFVGDV  600
ITRTAHRVQR FNDLCRQAII LSEIGSLSED TYRVASQALE EIYKHCVNAN NFARSTLESN  660
KLVLNGFDVE EKNDGCHRAK PTKKRKSFNK RECSDPERIN IKMLDDFQKR EQRNTRAHNF  720
DNCYISQQDI QTVDLDSRAS TLDVYYGAQR NVLGDLNSVS VMRDCYYGSQ LAILGLGQLH  780
SMPSRGSHYE MQHSMQRPLQ GLLTFRTPKA MEQPIRDSQF HGITSKQLDV DKSLSS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G002400.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014632656.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X5
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	K7KSA0	0.0	K7KSA0_SOYBN; Uncharacterized protein
STRING	GLYMA06G00461.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Glyma.06G002400.3.p
Entrez Gene	100802811

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]