PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G000400.1.p

Common Name

GLYMA_06G000400, LOC100798024

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 582aa MW: 64477.5 Da PI: 6.8437

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G000400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.5e-29	511	562	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Glyma.06G000400.1.p 511 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 562 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.461	501	581	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-24	515	562	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MEYGGLVQNA YGSYGSFSDI LGPETDFIDE LFVEGCWLET RVGSYLNCGT EANSSKSNTM 60 RSMESTQIIF QQEESLPDPE ISLMVGKRWW IGPRENPGPS SSVKERLVIA VGYLKEYAKN 120 SNLPIQVWVP ERRSARAQPQ DNIYPYAAAL LNGDAAAFQI QEDWVHVNDQ YWTPNVRFFR 180 SHEYPRHLRT PGSLALPVFE RGTAMCLGVV EILMPNNPPD LQCTVDFTSS TSSHHHNFIP 240 PAVTVKGFDE LYQSALNGIV QVLTCVCKAH NLPLALTWAP CIQQAGKSGC GHSNDEMNYV 300 STVYAASFVA DVELMGFLEA CSECHLLGGQ GVVGTAFTTT KPCFANDITS FSKAEYPLAH 360 HANMFGLHAA LGIPLRSASA DFVLEFFLPK DCHDTQDQKQ LLNSLFMLVQ QACRSLHLVM 420 EEEEELIALP SVVGKEMESS SWIAHMMEAQ QKGKGVSVSL EYLQEPKQEF KVTTNCSNTN 480 EQVSVGVEST AAFCGRRVGR KSAGDKRRTK AEKTISLPVL RQYFAGSLKD AAKSIGVCPT 540 TLKRICRQHG ITRWPSRKIK KVKELLHSNP QQLRLAVRPL L*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MEYGGLVQNA YGSYGSFSDI LGPETDFIDE LFVEGCWLET RVGSYLNCGT EANSSKSNTM  60
RSMESTQIIF QQEESLPDPE ISLMVGKRWW IGPRENPGPS SSVKERLVIA VGYLKEYAKN  120
SNLPIQVWVP ERRSARAQPQ DNIYPYAAAL LNGDAAAFQI QEDWVHVNDQ YWTPNVRFFR  180
SHEYPRHLRT PGSLALPVFE RGTAMCLGVV EILMPNNPPD LQCTVDFTSS TSSHHHNFIP  240
PAVTVKGFDE LYQSALNGIV QVLTCVCKAH NLPLALTWAP CIQQAGKSGC GHSNDEMNYV  300
STVYAASFVA DVELMGFLEA CSECHLLGGQ GVVGTAFTTT KPCFANDITS FSKAEYPLAH  360
HANMFGLHAA LGIPLRSASA DFVLEFFLPK DCHDTQDQKQ LLNSLFMLVQ QACRSLHLVM  420
EEEEELIALP SVVGKEMESS SWIAHMMEAQ QKGKGVSVSL EYLQEPKQEF KVTTNCSNTN  480
EQVSVGVEST AAFCGRRVGR KSAGDKRRTK AEKTISLPVL RQYFAGSLKD AAKSIGVCPT  540
TLKRICRQHG ITRWPSRKIK KVKELLHSNP QQLRLAVRPL L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G000400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014632652.1	0.0	protein NLP2 isoform X2
Swissprot	Q7X9B9	1e-135	NLP2_ARATH; Protein NLP2
TrEMBL	K7KS91	0.0	K7KS91_SOYBN; Uncharacterized protein
STRING	GLYMA06G00240.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-136	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G000400.1.p
Entrez Gene	100798024