PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G248800.1.p
Common NameGLYMA_05G248800, LOC100796042
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 714aa    MW: 79304.9 Da    PI: 6.8128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G248800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-202176156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         r++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Glyma.05G248800.1.p 21 RKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 76
                         789999***********************************************998 PP
2START170.89.2e-542244482206
                          HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          +a  a++e++++++ +ep+W ks        +s+ +d   +k+ +       ++ea+r+sgvv  ++  lv  ++d + +W + ++    
  Glyma.05G248800.1.p 224 IASNAMEEFLRLVQTNEPLWLKSNvdrrdvlSSDAYDRMFSKPNTRSKnpnVRIEASRDSGVVLLNSLALVDMFMDPN-KWIQLFPtivs 312
                          67899*******************9999777777777777777554338999**************************.99999999999 PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                           a t++vissg      g lqlm++elq+lsplv+ R+f+f+Ry++q ++g+w+++dvS d +q+    ++  R+++ pSg+li+++++g
  Glyma.05G248800.1.p 313 VARTIQVISSGvmgscsGSLQLMYQELQVLSPLVStREFYFLRYCQQIEQGTWAVMDVSYDFPQDSH-FAPQFRSHRCPSGCLIQDMPDG 401
                          *****************************************************************99.8********************* PP

                          EEEEEEEE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgr.lphwllrslvksglaegaktwvatlqrqcek 206
                          hsk+tw+ehv+ +++ lph l+r l+ sg+a+ga +w+ tlqr ce+
  Glyma.05G248800.1.p 402 HSKITWIEHVEIEDKtLPHRLYRNLIYSGMAFGAERWLTTLQRMCER 448
                          ************876267***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-20678IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-22680IPR009057Homeodomain-like
PROSITE profilePS5007118.0911878IPR001356Homeobox domain
SMARTSM003891.2E-181982IPR001356Homeobox domain
CDDcd000867.35E-192079No hitNo description
PfamPF000469.4E-182176IPR001356Homeobox domain
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084851.165214451IPR002913START domain
SuperFamilySSF559614.81E-36215449No hitNo description
CDDcd088755.27E-113218447No hitNo description
SMARTSM002342.1E-45223448IPR002913START domain
Gene3DG3DSA:3.30.530.208.8E-10224431IPR023393START-like domain
PfamPF018525.7E-46224448IPR002913START domain
SuperFamilySSF559617.46E-24469706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEYGGSQSPG EQDGSDSQER RKRYHRHTAN QIQRLESMFK ECPHPDEKQR LQLSRELGLA  60
PRQIKFWFQN RRTQMKAQHE RADNCALRAD NDKIRCENIA IREALKNVIC PSCGGPPLND  120
DSYFNDHKLR LENAHLKEEL DRVSSIAAKY IGRPISQLPP VQPIHISSLD LSMASFGNQG  180
MVGPAPAPSL NLDLLPAGTS SSMPNLPYQP PCLSDMDKSL MSDIASNAME EFLRLVQTNE  240
PLWLKSNVDR RDVLSSDAYD RMFSKPNTRS KNPNVRIEAS RDSGVVLLNS LALVDMFMDP  300
NKWIQLFPTI VSVARTIQVI SSGVMGSCSG SLQLMYQELQ VLSPLVSTRE FYFLRYCQQI  360
EQGTWAVMDV SYDFPQDSHF APQFRSHRCP SGCLIQDMPD GHSKITWIEH VEIEDKTLPH  420
RLYRNLIYSG MAFGAERWLT TLQRMCERFT YLMATSNPTR DNLGGVISSP EGKRSMMKLA  480
QRMVTDFCAS ISTSSGHRWT TLSGLNEIVV RVTVHKSSDP GQPNGVVLSA ATTIWLPTPP  540
HTVFNFFKDE NKRPQWDVLS NGNAVQEVAN IANGLHPGNC ISVLRAFNNS QNMLILQESC  600
IDSYGSLVVY CPVDLPSINT AVSGEDPSYI PLLPNGFTIL PDGQPDQEGD GASTSSNTNR  660
NIARSGGSLV TIAFQILVSS LPSAKVNMES VTTVNNLIGS TVQQIKSSLS CPT*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}.
UniprotTISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G248800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-126AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524332.10.0homeobox-leucine zipper protein HDG11-like
RefseqXP_028234107.10.0homeobox-leucine zipper protein HDG11-like
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A0B2PN290.0A0A0B2PN29_GLYSO; Homeobox-leucine zipper protein HDG11
TrEMBLI1K5830.0I1K583_SOYBN; Uncharacterized protein
STRINGGLYMA05G33520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]