PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G240500.1.p
Common NameGLYMA_05G240500, LOC100500594
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 359aa    MW: 41018.3 Da    PI: 5.0722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G240500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84e-34111022102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk y++++d +++++i ws++g sfv++d ++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k+++++         weF++++F +g+k
  Glyma.05G240500.1.p  11 FLKKCYDMVQDCNTDSVICWSHDGVSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDS---------WEFANENFVRGQK 91 
                          9****************************************************************998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Glyma.05G240500.1.p  92 HLLKNIHRRKH 102
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-367100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-337100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-537100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVKSSGSVPP FLKKCYDMVQ DCNTDSVICW SHDGVSFVIS DITQFSVTLL PTYFKHNNFS  60
SFIRQLNIYG FRKIDTDSWE FANENFVRGQ KHLLKNIHRR KHPHSADQQK ALPQQDNCDE  120
PSQEAPNHGL WKEVENLKLD KNSLTQELVK LRQHQESAES KLLLLSDRLQ GMEKHQQQML  180
SFLVMVVQSP GFMVQLLHPK ENNWRLAESW NRLDQDKQDD KPVASDGMII KYKPPVGEKL  240
KPVVPLSPGF ENQPEPELSA DGLKDLCISS EFLKVLLDEK LSPLENHSPF LLPDLPDDGS  300
WEQLFLGSPF LGNIQDSKNE SEGHTNSGME MEPTISETPN ENSRTFESMI IEMEKTRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25710025129Heat shock factor protein 1
5d5v_B2e-25710025129Heat shock factor protein 1
5d5v_D2e-25710025129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.47980.0cotyledon| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G240500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0915350.0BT091535.1 Soybean clone JCVI-FLGm-25G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233990.10.0heat stress transcription factor A-8-like
SwissprotQ9S7U52e-91HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLI1K5I60.0I1K5I6_SOYBN; Uncharacterized protein
STRINGGLYMA05G34450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Representative plantOGRP1084768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.17e-94heat shock transcription factor A8