PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G239800.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 246aa    MW: 28301.4 Da    PI: 8.4601
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G239800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.99.4e-23197246151
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                          kpr++W  eLH++Fv+av++L G ++A+Pk+i+e m+v+gLt+e+v+SHLQ
  Glyma.05G239800.1.p 197 KPRVVWIAELHSKFVNAVKKL-GLHQAVPKRIVEEMNVPGLTRENVASHLQ 246
                          79*******************.9***************************9 PP
2Response_reg61.64.1e-21201221103
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vd +p+ ++ ++q+++  +y ev +++++++al+l+ e++  +Dlil+ + mp+m+G+e+l +  +e  ++p+iv++   ++ ++++
  Glyma.05G239800.1.p  20 VLVVDNNPTDLDFIKQICNLCNY-EVSTCTESTQALNLVLERKdcIDLILIEVHMPTMNGYEFLYRASKEI-DVPVIVMSLDHSNYTVTR 107
                          89*********************.***************887779*********************97766.8*******777789**** PP

                          HHHTTESEEEESS-- CS
         Response_reg  89 alkaGakdflsKpfd 103
                          a+++Ga df +Kp  
  Glyma.05G239800.1.p 108 AVQLGACDFWVKPLR 122
                          *************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.68E-2816142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-3017167No hitNo description
SMARTSM004483.7E-1318130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.0819134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-1820123IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.94E-1821120No hitNo description
PROSITE profilePS5129410.371194246IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-21195246IPR009057Homeodomain-like
SuperFamilySSF466892.15E-13195246IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-21197246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAQVSSFEKV QYQFPEKIRV LVVDNNPTDL DFIKQICNLC NYEVSTCTES TQALNLVLER  60
KDCIDLILIE VHMPTMNGYE FLYRASKEID VPVIVMSLDH SNYTVTRAVQ LGACDFWVKP  120
LRYYQFKNMW THVLRKSLKE NNIQTKDYVG SLEDGERSRK RGKDNSEFGS SSVVRDQSNS  180
SSKEAEESKH RVSSMKKPRV VWIAELHSKF VNAVKKLGLH QAVPKRIVEE MNVPGLTREN  240
VASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16193246154ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G239800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358703e-42AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984371.11e-154uncharacterized protein LOC102670418
TrEMBLA0A445KTC20.0A0A445KTC2_GLYSO; Two-component response regulator ORR21
STRINGGLYMA05G34516.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.19e-58response regulator 2