PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G239500.1.p
Common NameGLYMA_05G239500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 361aa    MW: 40344.4 Da    PI: 7.0814
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G239500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-2759113155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++Wt eLH++F++av+qLG ++ A+Pk+ilelm+v+gLt+e+v+SHLQkYR 
  Glyma.05G239500.1.p  59 RQRIVWTDELHNKFLDAVSQLGDINTAVPKRILELMNVPGLTREQVASHLQKYRH 113
                          58****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2756115IPR009057Homeodomain-like
PROSITE profilePS5129415.30656116IPR017930Myb domain
SuperFamilySSF466893.23E-1957115IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2560113IPR006447Myb domain, plants
PfamPF002491.3E-863112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MWVHVARKAW NDNKVDIKCG RLEDNDKRKR EENDSKATRG GVKRGREPKR VNAGTSSKRQ  60
RIVWTDELHN KFLDAVSQLG DINTAVPKRI LELMNVPGLT REQVASHLQK YRHQLLKNNS  120
NEVKMQQKNG EPLATTKPAR LEDQAFAVTG RVPCEMPIEE QWPNHPGPGV EQQGTSYGHH  180
PPLNIGNAET RIPQSMIMNV DEESGYRVWS PSADTMRQLS IQDNNALTMV DTLHLQHRQQ  240
RQEPLIMHPP SVNLHPSCIL QVSEDSPIFH GYTTPAPAPA PAPAPPAFHA AANTLVPYVS  300
GSSDSLYQQP PLVNFGYDDK QMYIPGTPRG HQIKESAGDE DHDTLVDIYM STNTGFMTLL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-1755117162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G239500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984371.10.0uncharacterized protein LOC102670418
TrEMBLA0A0R0K5470.0A0A0R0K547_SOYBN; Uncharacterized protein
TrEMBLA0A445KTV50.0A0A445KTV5_GLYSO; Two-component response regulator ORR21
STRINGGLYMA05G34523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3539822
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-22response regulator 2