PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G234200.1.p
Common NameGLYMA_05G234200, LOC100775645
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 322aa    MW: 36343.7 Da    PI: 8.2142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G234200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.4e-5351311129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv++ +++  ++++ vd +k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdk
  Glyma.05G234200.1.p   5 LPPGFRFHPTDEELITYYLLRKVSDISFTS-KAVAVVDFNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDK 93 
                          79*************************999.88***************988999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e++  +g l+g+kktLvfy grap+gek++Wvmheyrle
  Glyma.05G234200.1.p  94 EIFG-GGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLE 131
                          ****.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-633150IPR003441NAC domain
PROSITE profilePS5100559.6035150IPR003441NAC domain
PfamPF023654.7E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEEKLPPGFR FHPTDEELIT YYLLRKVSDI SFTSKAVAVV DFNKSEPWDL PGKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TESGYWKTTG KDKEIFGGGV LIGMKKTLVF YMGRAPRGEK  120
SNWVMHEYRL ENKQPYSSKE EWVICRVFQK SSAPKKPQQT SSSQPSQESP ISMVNEFGDV  180
DLPNLNSIAN SSSSFTNNIA YNGDHPSNVN TNNMNLTMNW PSSTELVPSL PWPSGLLNPN  240
LSVNSLLLKA LQLRNTYQQR ETTTSTSDHH FATYVPQGFS HHNIGTDKHH FPPNLSASSS  300
SKALESCVPQ QEQPFNMDSI W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-56515617171NO APICAL MERISTEM PROTEIN
1ut4_B3e-56515617171NO APICAL MERISTEM PROTEIN
1ut7_A3e-56515617171NO APICAL MERISTEM PROTEIN
1ut7_B3e-56515617171NO APICAL MERISTEM PROTEIN
3swm_A3e-56515620174NAC domain-containing protein 19
3swm_B3e-56515620174NAC domain-containing protein 19
3swm_C3e-56515620174NAC domain-containing protein 19
3swm_D3e-56515620174NAC domain-containing protein 19
3swp_A3e-56515620174NAC domain-containing protein 19
3swp_B3e-56515620174NAC domain-containing protein 19
3swp_C3e-56515620174NAC domain-containing protein 19
3swp_D3e-56515620174NAC domain-containing protein 19
4dul_A3e-56515617171NAC domain-containing protein 19
4dul_B3e-56515617171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G234200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524377.10.0NAC domain-containing protein 92-like
RefseqXP_028233905.10.0NAC domain-containing protein 92-like
TrEMBLA0A445KTL50.0A0A445KTL5_GLYSO; NAC domain-containing protein 100
TrEMBLI1K5R80.0I1K5R8_SOYBN; Uncharacterized protein
STRINGGLYMA05G35090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-95NAC domain containing protein 58