PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G233700.1.p
Common NameGLYMA_05G233700, LOC100812563
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 366aa    MW: 40832.5 Da    PI: 5.3602
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G233700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box247.9e-081558340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Glyma.05G233700.1.p 15 ARACDSCVSRRARWFCAADDAFLCHGCDTLVHSAnqlasrHERV 58
                         578*****************************657788888876 PP
2CCT66.95.7e-23310352143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Glyma.05G233700.1.p 310 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 352
                          9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.9E-91360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4241360IPR000315B-box-type zinc finger
PfamPF006431.8E-61558IPR000315B-box-type zinc finger
CDDcd000211.03E-81660No hitNo description
PROSITE profilePS5101715.993310352IPR010402CCT domain
PfamPF062038.0E-18310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRDMKDAGAL GGKTARACDS CVSRRARWFC AADDAFLCHG CDTLVHSANQ LASRHERVRL  60
QTASSKVTTT HAWHSGFTRK ARTPRHNSKH FALQQRLKDE VLFNNTSVLP LVPELGGEEQ  120
EPVVVDNDET EEQMLCRVPV FDPFDVRTDD LDSFSDMDFA EFAADVESLL DKEDDEISAC  180
VGGGEGVQGA MVKVKDEEEI DGDVACYLES VFDDAFHWNN IESVLSDARE EKEGVVACDG  240
GVGDEEGGTK RDIFLRLNYD EVITAWSSQG SSPWTTSNPP KFNSDYDFSL GLSGVGGEVR  300
SLRGHLDGGR EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTCFVGANA  360
FPAYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320336RRTRLFAKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191560.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G233700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8642650.0GQ864265.1 Glycine max CONSTANS-like zinc finger protein (COL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304365.20.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD03e-84COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLK7KRL40.0K7KRL4_SOYBN; Uncharacterized protein
STRINGGLYMA05G35151.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-86B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]