PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G229500.3.p
Common NameGLYMA_05G229500, LOC100777095
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 347aa    MW: 37877.4 Da    PI: 5.4417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G229500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452112491255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Glyma.05G229500.3.p 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                          6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.236199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-6209253No hitNo description
SuperFamilySSF474595.23E-10209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-7213255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNRGVLQSSP VKQMMAGNPN NWWNINTMRP PPPPPQASPP FFSTPSNFLT PYYTPTSSLP  60
LPSWHDNNQE LPESWSQLLM SGMVSEEEKG GMCQVQSKKL ENWEQQMLSQ APSAPIVDVK  120
QESSVNSYAY GHGNEEFQPA KPTWSQIVPA SSPKSCVTSF SSSMLDFSNN NTDARPPPPD  180
PSSECDSAAT GGAFKKARVQ PPTTQSTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSLPYL GSGSGNMRQQ QSVQGENNCI FPEDPGQLLN ENCLKRKAAS  300
EQDSQEEPKK DLRSRGLCLV PVSCTLQVGS DNGADYWAPA FGGGFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37830.0cotyledon| hypocotyl| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G229500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579394.10.0uncharacterized protein LOC100777095 isoform X2
SwissprotQ8S3D11e-106BH068_ARATH; Transcription factor bHLH68
TrEMBLK7KRP10.0K7KRP1_SOYBN; Uncharacterized protein
STRINGGLYMA05G35610.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]