PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G227200.1.p
Common NameGLYMA_05G227200, LOC100791127
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20820.7 Da    PI: 9.0892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G227200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.3e-211357549
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +   rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs  +k y +
  Glyma.05G227200.1.p 13 DPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNKPYSF 57
                         5568*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.1161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-25173IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRRKIEIAT LKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAIVVFSI GNKPYSFGHP  60
GVDVIAAKFL QEAANSSDAK QIDAQGNNPS NELGDMNRLN QQLSDVQTQI LEEEKKGAEH  120
DERLKQHQVT QLSQYKELQA SYLELQHRVK DYVNAIEVSE CMILLAQEPV VGITKQVTTK  180
RRKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17169169MEF2 CHIMERA
6byy_B5e-17169169MEF2 CHIMERA
6byy_C5e-17169169MEF2 CHIMERA
6byy_D5e-17169169MEF2 CHIMERA
6bz1_A5e-17169169MEF2 CHIMERA
6bz1_B5e-17169169MEF2 CHIMERA
6bz1_C5e-17169169MEF2 CHIMERA
6bz1_D5e-17169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G227200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524404.11e-136agamous-like MADS-box protein AGL29
TrEMBLI1K5Y61e-134I1K5Y6_SOYBN; Uncharacterized protein
STRINGGLYMA05G35820.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-38AGAMOUS-like 29