PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G225100.4.p | ||||||||
Common Name | GLYMA_05G225100, LOC100794811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 449aa MW: 50540.3 Da PI: 7.3066 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113 | 3.3e-35 | 47 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ e+L++k+e+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Glyma.05G225100.4.p 47 LPAGVKFDPTDQELI-EHLEAKIEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnec 134 799************.99*********5553334444434666646**********.555666799******************845555 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y++ Glyma.05G225100.4.p 135 dlqGGETRWHKTGKTRPVMV-NGKQKGYKKILVLYtnFGKNRKPEKTNWVMHQYHM 189 54433778************.999***********5547999999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-38 | 43 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.028 | 47 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-16 | 48 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MNKISNLSCV RSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKIEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG YKKILVLYTN FGKNRKPEKT 180 NWVMHQYHMG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTGEGSGEQ QPNNNNGRRD 240 SGSGSCSSSK EIVTHRDEMS AVVGVPPITT FNTSLDIQQL KSNHFGFIPF RKGFDEVGIG 300 EASTAREVQA SGSCNEVHER HVAHHHQQQQ QNQHAHQQIA TTAFHISSPS LPISTIISPP 360 PFHHASIILD DNSYHVSRIM LQNENFQQQQ QQHHKLGGRS ASGLEELIMG CTSTDIKAES 420 SITNPQEAEW LKYSSYWPDP GNMQDHRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-12 | 45 | 189 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G225100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580485.1 | 0.0 | NAC domain-containing protein 75-like | ||||
Refseq | XP_028233794.1 | 0.0 | NAC domain-containing protein 75-like | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A445KSP0 | 0.0 | A0A445KSP0_GLYSO; NAC domain-containing protein 75 isoform A | ||||
TrEMBL | K7KRS3 | 0.0 | K7KRS3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G36031.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-140 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G225100.4.p |
Entrez Gene | 100794811 |
Publications ? help Back to Top | |||
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