PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G215900.1.p | ||||||||
Common Name | GLYMA_05G215900, LOC100815760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 41203.9 Da PI: 5.9271 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 8.5e-29 | 134 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D ynWrKYGqK++ g+++prsYYrCt++ gC+++k+v+rs+edp+v++itY+g+H+++ Glyma.05G215900.1.p 134 EDSYNWRKYGQKDILGAKYPRSYYRCTFRntqGCWATKQVQRSDEDPTVFDITYRGKHTCS 194 8**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.527 | 128 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-28 | 130 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 132 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.9E-40 | 133 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 134 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MESDLSWEQN TLINELIQGM EVARKLKADL RMPYSVDSRD LLVQRILSSY EKALLILRCN 60 ASSTSELQAM SQATPTLLPE SPLSVHGSPL REDVDGTIKD HQEVKHDSKK RKATPKWMDH 120 VRVSCESGLE GPHEDSYNWR KYGQKDILGA KYPRSYYRCT FRNTQGCWAT KQVQRSDEDP 180 TVFDITYRGK HTCSQGNNAV LPPKSPEKQE KPTHSHNIDI HRAQASQESL TKFRNILSVN 240 TDNLNNGDMA YPFTFPSTSF GCMKQDNHSL IPWALENESF LSDLYQTHLL STTIPESNYF 300 PSPTFQMNVF DGIYSKPHSE SDINEIISTN TSATNSPIPD FNFSLDPVEI DPNFPFNTPG 360 LFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-18 | 135 | 191 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 2e-18 | 135 | 191 | 18 | 74 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57156 | 0.0 | flower| hypocotyl| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G215900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031235 | 0.0 | KT031235.1 Glycine max clone HN_CCL_109 WRKY transcription factor (Glyma08g02580.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525349.1 | 0.0 | probable WRKY transcription factor 41 | ||||
Refseq | XP_028233666.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A445KRT9 | 0.0 | A0A445KRT9_GLYSO; Putative WRKY transcription factor 41 isoform A | ||||
TrEMBL | I1K6A3 | 0.0 | I1K6A3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G36970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 4e-74 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G215900.1.p |
Entrez Gene | 100815760 |