PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G214400.1.p | ||||||||
Common Name | GLYMA_05G214400, LOC100813992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37202.2 Da PI: 5.0571 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 107 | 158 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g+ Glyma.05G214400.1.p 107 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAIVYDNAAIQLRGA 158 59********.**********72....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.28E-31 | 107 | 164 | No hit | No description |
SMART | SM00380 | 1.0E-35 | 108 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-12 | 108 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 108 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 108 | 165 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MASSSIKNTH HLNRTKLFME EDTLLKKKRH YPKLIRIRVT DADATDSSSD DDEPSVSSTR 60 RRVKYFVNEI TIQGGGGGGG CVNVVSRKRR FKAGAGAPSC RRRTGAKKFR GVRQRPWGKW 120 AAEIRDPLRR VRLWLGTYDT AEEAAIVYDN AAIQLRGADA LTNFVTPPRE NRKTGYCSGE 180 ESRNNDLRSP TSVLGCRSVY EEAESVTANA TGNDVVDESV TVVANDVVGP SSECEYSCVS 240 EDSNNDKLKP ESVFPIPNDV VFDFQSTLDM FDEGINTNNN NNVAESSIFL AEDFDFKGSF 300 VNENLDLGFT SWHRECDNFQ DIGDLFVWDP LVAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 107 | 164 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27816 | 0.0 | leaf| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G214400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU873089 | 0.0 | EU873089.1 Glycine max cytokinin response factor 2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580543.1 | 0.0 | ethylene-responsive transcription factor CRF2-like | ||||
Refseq | XP_028233652.1 | 0.0 | ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A445KSJ2 | 0.0 | A0A445KSJ2_GLYSO; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | I1K6B5 | 0.0 | I1K6B5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G37120.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 7e-48 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G214400.1.p |
Entrez Gene | 100813992 |