PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G211900.1.p
Common NameGLYMA_05G211900, LOC102663255
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 289aa    MW: 32559.4 Da    PI: 5.4073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G211900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30135194159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldD ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+ +tY+ eH h+
  Glyma.05G211900.1.p 135 LDDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSHLDPAVFLVTYTAEHSHP 194
                          58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30121196IPR003657WRKY domain
SuperFamilySSF1182903.66E-26129196IPR003657WRKY domain
PROSITE profilePS5081132.374130196IPR003657WRKY domain
SMARTSM007741.3E-36135195IPR003657WRKY domain
PfamPF031061.3E-25136194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDEFACLRDW DLEAIVRGNT GEATTMDDPN PDFSYFFSEQ DELLDSFPEF SETTRVLDDL  60
EDLYKPFYPV FHPLSPHTIV TTSPPIPIEP EQVIKASEEK VALQGLKVTA APKCKKSKKS  120
QNKSVVKQVT TAEGLDDAWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVERSHLDP  180
AVFLVTYTAE HSHPHPTRRN SLAGTTRKNN SLVPPPTTTR HQKKTTCSSS VQQSMDLKKE  240
EDFLDWLEDD SAQFGDGWIP SSDLEKLIGL ECQHFALDTG FTDDFPHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19122197180Disease resistance protein RRS1
5w3x_D4e-19122197180Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.499861e-142root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO274269481e-142
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G211900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-131AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580551.10.0probable WRKY transcription factor 29
RefseqXP_028233619.10.0probable WRKY transcription factor 29
TrEMBLA0A445KSF10.0A0A445KSF1_GLYSO; Putative WRKY transcription factor 29
TrEMBLK7KRZ90.0K7KRZ9_SOYBN; Uncharacterized protein
STRINGGLYMA05G37390.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-34WRKY family protein