PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G211200.1.p
Common NameGLYMA_05G211200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 321aa    MW: 36142.4 Da    PI: 6.1007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G211200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G g+W  ++++ g+ R++k+c++rw +yl
  Glyma.05G211200.1.p 14 RGLWSPEEDEKLIRYITTHGYGCWGEVPEKAGLLRCGKSCRLRWINYL 61
                         788*****************************99************97 PP
2Myb_DNA-binding52.51.1e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Glyma.05G211200.1.p  67 RGRFTPEEEKLIITLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                          89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.241961IPR017930Myb domain
SuperFamilySSF466893.04E-2911108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231568IPR009057Homeodomain-like
CDDcd001675.76E-111761No hitNo description
PROSITE profilePS5129425.59262116IPR017930Myb domain
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1567111IPR001005SANT/Myb domain
CDDcd001675.08E-1269112No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWGEV PEKAGLLRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIT LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKTS  120
VSSTTIAQSI DHNSSHQFNY NSNLVLDHFP NQDNNLQTKP PVQEALFSST CPLFIFDTTD  180
SLEPGTATDC KSSTVRAEHF HQDAVGLSSE TWNSSHHQVH ALPPLTVSVG LDTSNYLPPL  240
IEHVDNMVPI EVQSCTIDEQ GDIALECLQR QGLNEWVETQ QQCPNFLFWD SVEGQLGGEE  300
LAPNSSNVEA NTLSPFPCSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.383541e-123pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G211200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630781.10.0plectin/S10 domain-containing protein isoform X1
RefseqXP_028230892.10.0uncharacterized protein LOC114411400
TrEMBLA0A445KS220.0A0A445KS22_GLYSO; Transcription factor MYB86
TrEMBLI1K6E60.0I1K6E6_SOYBN; Uncharacterized protein
STRINGGLYMA05G37460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-100myb domain protein 103