PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G204100.4.p | ||||||||
Common Name | GLYMA_05G204100, LOC100806507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 391aa MW: 42729.5 Da PI: 8.3418 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.4 | 3.2e-41 | 95 | 171 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+++v + g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Glyma.05G204100.4.p 95 CLVDGCHADLSNCRDYHRRHKVCEVHSKTAQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 171 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-34 | 88 | 156 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.872 | 92 | 169 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-38 | 93 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-30 | 95 | 168 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDWNLKALSW DLSEVDQANL PNMETMEGSS RYGMYRTKGE FSVDLKLGQV GNSGTESVLT 60 KSKDAVGVSK MTSSSTSGSS KRARALSNGT QTVSCLVDGC HADLSNCRDY HRRHKVCEVH 120 SKTAQVSIGG QKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PESLTRSGSF 180 LSNYQGTQLL PFSSSHEYPS TTVVNPTWGG VLTTSGDVRL HGHNQHHHQV HLADKQDLFL 240 GSSPAGYKEG KQLAFMQGDH TLNNRSPHLP GASVGQAQMF LRTSLYSESD GLRCKMFCDS 300 LTSSIQDNNT SRALSLLSSP PQPLSPGNGL NLMVNSHSPL MQPLGLSLHD NSLGSVDPVL 360 GPNDSSSMYN IGSNGSQGNE APPLFPFQWE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 95 | 168 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 168 | KRSCRKRLDGHNRRRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37630 | 0.0 | flower| meristem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G204100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-155 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525416.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
Refseq | XP_014631309.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
TrEMBL | I1K6N7 | 0.0 | I1K6N7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G38180.8 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-74 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G204100.4.p |
Entrez Gene | 100806507 |