PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G202300.1.p
Common NameGLYMA_05G202300, LOC100812015
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 242aa    MW: 27227.6 Da    PI: 9.3572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.12.1e-46141411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp ++  + +e +fFs+++ ky++g+r nr+tk gyWkatg+dk
  Glyma.05G202300.1.p  14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKYDPWDLPGNC--DPQERHFFSPKEAKYRNGNRMNRTTKCGYWKATGSDK 100
                          79****************************.89***************544..67899******************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ s+    +  vg++ktL+fy+g++pkg++t+Wv+heyrl
  Glyma.05G202300.1.p 101 RISSStstCNGIVGVRKTLIFYEGKSPKGSRTHWVLHEYRL 141
                          ***986555566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5310170IPR003441NAC domain
PROSITE profilePS5100551.77114170IPR003441NAC domain
PfamPF023657.5E-2415141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKYDPWDLP  60
GNCDPQERHF FSPKEAKYRN GNRMNRTTKC GYWKATGSDK RISSSTSTCN GIVGVRKTLI  120
FYEGKSPKGS RTHWVLHEYR LVSVETGAAN SSHNYVNEIG DWVLCRLSMK KRSVESDGSG  180
THHKHRQNTA VQTTRPRLMF DFMMVGKTNS STSSSCSSSS NIMEVSSNAS DHEETSGYAH  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-471417517170NO APICAL MERISTEM PROTEIN
1ut4_B2e-471417517170NO APICAL MERISTEM PROTEIN
1ut7_A2e-471417517170NO APICAL MERISTEM PROTEIN
1ut7_B2e-471417517170NO APICAL MERISTEM PROTEIN
3swm_A2e-471417520173NAC domain-containing protein 19
3swm_B2e-471417520173NAC domain-containing protein 19
3swm_C2e-471417520173NAC domain-containing protein 19
3swm_D2e-471417520173NAC domain-containing protein 19
3swp_A2e-471417520173NAC domain-containing protein 19
3swp_B2e-471417520173NAC domain-containing protein 19
3swp_C2e-471417520173NAC domain-containing protein 19
3swp_D2e-471417520173NAC domain-containing protein 19
4dul_A2e-471417517170NAC domain-containing protein 19
4dul_B2e-471417517170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191170.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G202300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525425.10.0NAC domain-containing protein 83-like
RefseqXP_028233463.10.0NAC domain-containing protein 83-like
SwissprotQ9FY939e-69NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2QBQ20.0A0A0B2QBQ2_GLYSO; NAC domain-containing protein 29
TrEMBLI1K6Q90.0I1K6Q9_SOYBN; Uncharacterized protein
STRINGGLYMA05G38380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-70NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]